Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13h05
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...   102   7e-23
SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S...    28   1.7  

>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score =  102 bits (244), Expect = 7e-23
 Identities = 71/216 (32%), Positives = 104/216 (48%), Gaps = 13/216 (6%)
 Frame = -1

Query: 745 DWYILPVLNPDGYEYTHTHDRMWRKNR--ARYGECVGVDLNRNFXXXXXXXXXXXXXEDP 572
           +W  +PVLN DGYEYT ++DR+W KNR      EC G++L+ N+              DP
Sbjct: 283 EWIFIPVLNVDGYEYTWSNDRLWSKNRQPLNNSECFGINLDANW------AFGFNGNIDP 336

Query: 571 GNIFYRGPKPFSEPETAALRRLITK--SSTPFKV--FLSFHSYGEVVIFPWGYT-DEPCP 407
            +  Y G  PF   ET AL  LIT+  S    KV  FL  HSY + V++P+ YT D   P
Sbjct: 337 CSNEYGGLSPFQANETMALFNLITESLSQEQKKVVGFLDVHSYSQSVLWPYAYTCDLFPP 396

Query: 406 DYVELLEGGTSIAKAIYETSGRTYK-----VGSTKDLMYFACGNSIDWSYAVAGIPYSYM 242
           D     E    + K ++  + R Y      +       ++  G +IDW Y  A + + + 
Sbjct: 397 DTENFEELAIGLVKELHRVNSRYYTYQQACIPYDGFHKHYLPGTAIDWVYFAADVAWPFN 456

Query: 241 VELRGK-KHRFLLPQNEIESTAKEVMNGVFRLLDFV 137
           + LR    + +LLP  +I  TAKE    +    +F+
Sbjct: 457 IRLRDMGDYGYLLPAKQIVPTAKEFFAMILYYGEFI 492


>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
           Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 153 DCWILLTGKVKVASRVTVRNDIFCLYK*MINQELNRYV 40
           DCW++ T  +  A +  V ND+  L+  +   E + YV
Sbjct: 69  DCWVVATAYMTTALKPNVMNDVTQLHTIVTTTEESPYV 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,305,376
Number of Sequences: 5004
Number of extensions: 71602
Number of successful extensions: 167
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)