Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13h05
         (778 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0141 + 1017654-1017745,1018332-1018389,1018485-1018595,101...    38   0.007
06_01_0324 - 2357432-2357724,2358042-2358105,2358321-2358404,235...    34   0.14 
06_03_0854 + 25400855-25403741,25406174-25407708                       29   5.4  

>02_01_0141 +
           1017654-1017745,1018332-1018389,1018485-1018595,
           1018853-1018990,1019559-1019628,1019711-1019766,
           1020203-1020328,1020648-1020787,1020932-1021004,
           1021095-1021169,1021277-1021591
          Length = 417

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 1/140 (0%)
 Frame = -1

Query: 643 GVDLNRNFXXXXXXXXXXXXXEDPGNIFYRGPKPFSEPETAALRRLITKSSTPFKVFLSF 464
           GVDLNRN+              +       G  PFSEPE   +R L +KS  P  ++++ 
Sbjct: 159 GVDLNRNWSVDWGKKEKDYDPYEENP----GTAPFSEPEAQIMREL-SKSFKP-HMWVNV 212

Query: 463 HSYGEVVIFPWGYTDEPCPDYVELLEGGTSIAKAIYETSGRTYKVGSTKDLM-YFACGNS 287
           HS  E +  P+ + +   P+        T +    +     +  VGS    + Y A G +
Sbjct: 213 HSGMEALFMPYDHKN-TTPNGASAHLMRTVLENLNHRHFQDSCLVGSGGGAVGYLAHGTT 271

Query: 286 IDWSYAVAGIPYSYMVELRG 227
            D+ Y +  +P  +  E+ G
Sbjct: 272 TDYMYDIVKVPMPFTFEIYG 291


>06_01_0324 -
           2357432-2357724,2358042-2358105,2358321-2358404,
           2358638-2358715,2359298-2359360,2359459-2359561,
           2359675-2359800,2360212-2360258,2361284-2361388,
           2361483-2361605,2361759-2361854,2362052-2362141,
           2362759-2362815,2362899-2363028,2363613-2363708,
           2363815-2363875,2364391-2364490
          Length = 571

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 44/175 (25%), Positives = 65/175 (37%), Gaps = 9/175 (5%)
 Frame = -1

Query: 757 VTNKDWYILPVLNPDGYEYTHTHDRMWRKNRARYGECVGVDLNRNFXXXXXXXXXXXXXE 578
           V N   +ILP +NPDG+               R G    VDLNR+F              
Sbjct: 215 VKNMHLHILPTMNPDGFAL------------RRRGNANNVDLNRDF-------------- 248

Query: 577 DPGNIFYRGPK-PFSEPETAALRRLITKSSTPFKVFLSFHSYGEVVIFPW-GYTDEP--- 413
            P   F    +  + +PET A+   + +    F    S H    V  +PW G  D+    
Sbjct: 249 -PDQFFTNNDEINYRQPETRAIMNWVKQEH--FTASASLHGGALVANYPWDGSRDQSKQY 305

Query: 412 --CPDYVELLEGGTSIAKAIYETS-GRTYKVGSTKDLMYFAC-GNSIDWSYAVAG 260
             CPD        +  +++ Y  S  + +K G T    ++   G   DW+Y   G
Sbjct: 306 YGCPDDKTFRYMASVYSQSHYNMSLSKEFKGGITNGAFWYPIYGGMQDWNYIHGG 360


>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 587 TFLAFLSPAVTEIPVKVNSDAFTVTGPVLTPHS 685
           T L+  SP + ++PV  +SDA  V  P L+  S
Sbjct: 265 TLLSDASPVIVQVPVPPSSDAAPVPAPTLSDAS 297


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,686,074
Number of Sequences: 37544
Number of extensions: 444215
Number of successful extensions: 1036
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)