Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13h03
(809 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 30 0.34
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 30 0.45
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 29 0.59
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 29 0.59
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.78
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 29 0.78
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 29 0.78
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 29 0.78
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 28 1.4
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 28 1.4
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 27 2.4
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 2.4
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 2.4
SPCC1442.17c ||SPCC285.02c|DUF292 family protein|Schizosaccharom... 27 3.2
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 27 3.2
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 27 4.2
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 27 4.2
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 27 4.2
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 27 4.2
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 26 5.5
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida... 26 5.5
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 26 5.5
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 26 7.3
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom... 26 7.3
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 26 7.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 7.3
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 26 7.3
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe... 25 9.6
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 25 9.6
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch... 25 9.6
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar... 25 9.6
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 9.6
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb... 25 9.6
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 25 9.6
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 25 9.6
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 30.3 bits (65), Expect = 0.34
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Frame = -1
Query: 350 IQEESNQSDSNKEDSQEQALDIKPSME--PEKATNQVSLESDNYSISDVNSELPQPKVLN 177
+ ++S S++ DS+E+ D+ + PE +N SL + + N E
Sbjct: 3963 VTKDSVVSENENSDSEEENQDLDEEVNDIPEDLSN--SLNEKLWD--EPNEEDLLETEQK 4018
Query: 176 ANEEPEIEKKDDPTSKEIERKATEDPEGNSKTE 78
+NE+ + D SKE + KA ED + K +
Sbjct: 4019 SNEQSAANNESDLVSKEDDNKALEDKDRQEKED 4051
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = -1
Query: 365 DCQIDIQEESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSE 201
+ Q DIQE ++Q ED + D+K + + LE + +D N E
Sbjct: 4064 EIQPDIQENNSQPPPENEDHLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKE 4118
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 29.9 bits (64), Expect = 0.45
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Frame = -1
Query: 353 DIQEESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSI-SDVNSELPQPKVLN 177
D + +S + D DS+E + D S E K TN+ S + ++ DV + + K+
Sbjct: 225 DPEYDSAEEDYLSTDSEEFSEDSDNSSEENKDTNEPSTKDAEKTVPEDVVNLRSEQKLQP 284
Query: 176 ANEEPEIEKKDDPTSKEIERKATEDPEGNSKTES*MNNLI 57
+ PE E +D + + + E S+ +S N I
Sbjct: 285 SFGHPEFENEDFDLETSEDDSSDDATERASRFKSWANKQI 324
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 29.5 bits (63), Expect = 0.59
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = -1
Query: 314 EDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNS-ELPQPKV-LNANEEPEIEKKDD 141
E+ + D + E E A S+ES++ + + N E Q V LNA+ +IEK D
Sbjct: 34 EELPQDEDDYEQEEENEDADQNTSVESESEELDNENEDERVQKSVNLNASSTSDIEKFSD 93
Query: 140 PTSKEIERKATEDPEGNSKTE 78
E +KA ++ + TE
Sbjct: 94 LQLSENIQKAIKEMGFETMTE 114
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 29.5 bits (63), Expect = 0.59
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -1
Query: 353 DIQEESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNS 204
+ +ES++ D ++ E D + ++ E + S SDN +SD NS
Sbjct: 351 EANDESSEDDDEDNNTDEANEDAQSNVSDESPKGEGSSHSDNVVLSDGNS 400
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.1 bits (62), Expect = 0.78
Identities = 16/100 (16%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Frame = -1
Query: 371 KPDCQIDIQEESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELPQ 192
K + ++E +++ + ++ S+ + + + + E K +++ + + P+
Sbjct: 6 KTSVKKSVKETASKKGAIEKPSKSKKITKEAAKEIAKQSSKTDVSPKKSKKEAKRASSPE 65
Query: 191 PKVLNANEEPEIEKKDDPTSK-EIERKATEDPEGNSKTES 75
P + ++ + +KK++ +S+ E E ++E +S++ES
Sbjct: 66 PSKKSVKKQKKSKKKEESSSESESESSSSESESSSSESES 105
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 29.1 bits (62), Expect = 0.78
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = -1
Query: 242 LESDNYSISDVNSELPQPKVLNANEEPEIEKKDDPTSKEIERKATEDPEGNSKTES 75
+ + Y VN E+ PK+L+ +E +E+ D + R+ P G + + S
Sbjct: 419 VNTSRYGNFYVNFEVTIPKILSPHERSLLEQLADALNDSTARRTQSSPSGTNSSTS 474
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 29.1 bits (62), Expect = 0.78
Identities = 19/72 (26%), Positives = 36/72 (50%)
Frame = -1
Query: 341 ESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELPQPKVLNANEEP 162
E Q + + E+ +++P + E + Q + +N ++S E QP+V A+E+P
Sbjct: 208 EVEQQSAPNSNGNEEVNNLEPVGQNE--SKQEPPKEENSNVSQEQPEQAQPEVSAASEQP 265
Query: 161 EIEKKDDPTSKE 126
E +PT+ E
Sbjct: 266 E----SNPTTTE 273
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 29.1 bits (62), Expect = 0.78
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -1
Query: 266 EKATNQVSLESDNYSISDVNSELPQPKVLNANEEPEIEKKDDPTS--KEIERKATEDPE 96
E + SLE I S +P P+ ++ N + E ++ +PT+ KE+E A + E
Sbjct: 122 ETPLKETSLELSEEEIITSKSPIPSPETIHKNIDVEEKETIEPTTPVKEVETTAHAEEE 180
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 28.3 bits (60), Expect = 1.4
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = -1
Query: 341 ESNQSDSNKEDSQEQALDIK-PSMEPEKATNQVSLESDNYSISDVNSELPQPKVLNANEE 165
E+N ++S+ + S + +DI+ PS EP++ + S ++ S+ +V PQ + + +
Sbjct: 59 ENNIANSSSQQSVSE-IDIQLPSSEPKEGVKEESNLIESNSLDNVQEINPQNTIGDKSAH 117
Query: 164 PEIEKKDD 141
E E +D
Sbjct: 118 TEEESSND 125
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 28.3 bits (60), Expect = 1.4
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 14/95 (14%)
Frame = -1
Query: 803 PGTNKTAEIKLEEAPSEVKTKIDSEQKMEIVTVPAAVDKTESD--------RKVEDTSN- 651
PG+ A L+E P + K E++ +VT+ + +K E D R+V++ +
Sbjct: 654 PGSTMKAASALKEYPQQQSMKSGGEKQDNLVTITMS-EKVELDLLREEKAIRQVQEAEDA 712
Query: 650 -----ITLVIPEIKVDDTEMIEQKLDEQSMITIKE 561
+ I ++++ + EM EQ +++S I+ KE
Sbjct: 713 LERERLFREINDLQIQNAEMKEQVYEKESTISQKE 747
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 27.5 bits (58), Expect = 2.4
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = -1
Query: 347 QEESNQ---SDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELPQPKVLN 177
+EES S+S++E+S+ + +++ + A ++ S ESD+ S S+ E +
Sbjct: 44 EEESASSSESESSEEESESEESEVEVPKKKAVAASEDS-ESDSES-SEEEEETESEEDSE 101
Query: 176 ANEEPEIEKKDDPTSKEIERKATEDPE 96
++E E E + + S+E E E
Sbjct: 102 VSDESESESESESESEEESESEEESDE 128
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = -1
Query: 266 EKATNQVSLESDNYSISDVNSELPQPKVLNANEEPEIEKKDDPTSKEIERKAT 108
EK+++ ++ D S+ VN L Q + N + +++ KE+E+K T
Sbjct: 103 EKSSSYDTVLHDCSSLKSVNEALKQAQDQNLKQTAQLQNLLSDKEKEVEKKIT 155
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.5 bits (58), Expect = 2.4
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +1
Query: 658 VSSTFLSDSVLSTAAGTVTISIFCSLSIFVLTSDGASSSFISAVLFVP 801
VSS L+ S+LS++ G + + S F LTS+ S S S V P
Sbjct: 3505 VSSVSLNSSLLSSSGGFSSSAFSTGSSSFSLTSENGSVSSSSLVSSSP 3552
>SPCC1442.17c ||SPCC285.02c|DUF292 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 271
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = -1
Query: 350 IQEESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELP-QPKVLNA 174
++EE+ Q D K + + + + +TN SL+S NY LP P + ++
Sbjct: 201 LKEENTQEDDEKVNGNLANISKRAEPQNNGSTNASSLQSSNY--------LPTNPTLTHS 252
Query: 173 NEEPEIEK 150
N+ P E+
Sbjct: 253 NKAPSFEE 260
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 27.1 bits (57), Expect = 3.2
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 14/107 (13%)
Frame = -1
Query: 353 DIQEESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSIS-DVNSEL------- 198
D SN SDS + S + + S + + S +SD+ S S D NS
Sbjct: 269 DSDSSSNSSDSEDDSSSDSSDSESESSSEDSDSTSSSSDSDSSSSSEDGNSNTDTTTSGE 328
Query: 197 --PQPKVLNANEEPEIEKKDDPTS----KEIERKATEDPEGNSKTES 75
Q + + E KD+ +S K ++RK ED E ++ T+S
Sbjct: 329 VSAQSSTNSTSSEESTSVKDEDSSKIHDKSLKRK-HEDDESSTSTKS 374
Score = 25.8 bits (54), Expect = 7.3
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Frame = -1
Query: 353 DIQEESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELPQPKVLNA 174
D + ES+ DS+ + + D S + + S +SD+ S S + + N+
Sbjct: 260 DSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDSDSTSSSSDSDSSSSSEDGNS 319
Query: 173 NEEP----EIEKKDDPTSKEIERKATEDPEGNSK 84
N + E+ + S E + E +SK
Sbjct: 320 NTDTTTSGEVSAQSSTNSTSSEESTSVKDEDSSK 353
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -1
Query: 209 NSELPQPKVLNANEEPEIEKKDDPTSKEIERKATEDPEGNSKTES*MNNLI 57
N E KVL+ N+ E+ + + + EI K + + SK E +NN I
Sbjct: 16 NVETSIDKVLDGNQIEEMSRGNAKSKDEIIAKLLTEGQALSKNELKLNNTI 66
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 26.6 bits (56), Expect = 4.2
Identities = 19/77 (24%), Positives = 33/77 (42%)
Frame = -1
Query: 305 QEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELPQPKVLNANEEPEIEKKDDPTSKE 126
Q++ + K +E ++ +L S + SIS V + PK+ E + EK + S
Sbjct: 164 QKEKKESKVKLESKEEKISRNLRSSSRSISPVTEQPQSPKIQPVIPEKK-EKSEKKESSM 222
Query: 125 IERKATEDPEGNSKTES 75
RK + P + S
Sbjct: 223 TLRKRSVSPSSQNTARS 239
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 688 LSTAAGTVTISIFCSLSIFVLTSDGASSSFISAVL 792
LST GT+ FC ++ V+ S S S I+++L
Sbjct: 959 LSTRLGTLKEKGFCFNNLIVMNSQNISESSITSIL 993
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 26.6 bits (56), Expect = 4.2
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = -1
Query: 338 SNQSDSNKEDSQ-EQALDIKPSMEPEKATNQVSLESDNYSISDVNSELPQPKVLNANEEP 162
+N+ S+ DS E D + + N+V ++N D ++ + +ANEE
Sbjct: 54 TNEKQSSPVDSHNESPNDTTINKGEDGNENEVDNVNNNDKKEDEDNVEENEEEADANEEE 113
Query: 161 EIEKKDDPTSKEIE 120
E +++DD +E E
Sbjct: 114 EEDEEDDEEDEEDE 127
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1220
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 640 TKVILEVSSTFLSD-SVLSTAAGTVTISIFCSLSIFVLTSDGASSS 774
T V+ + S + V+ AAGTVT +++ ++ T AS S
Sbjct: 808 TTVLADASGSVTGTVEVVEPAAGTVTTTVYSGSEVYTTTLASASES 853
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 685 VLSTAAGTVTISIFCSLSIFVLTSDGASSS 774
V+ AAGTVT +++ ++ T AS S
Sbjct: 752 VIEPAAGTVTTTVYSGSEVYTTTLASASES 781
>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 494
Score = 26.2 bits (55), Expect = 5.5
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Frame = -1
Query: 278 SMEPEKATNQV------SLESDNYSISDVNSELPQPKVLNANEEPEIEKKDDPTSKEIER 117
S E E+A NQ+ +LES S+ D+ ++ L + IEK D T ++ R
Sbjct: 390 SEETERAKNQLKSSLLMNLESRMISLEDLGRQIQTQNGLYITPKEMIEKIDALTPSDLSR 449
Query: 116 KATEDPEGN 90
A GN
Sbjct: 450 VARRVLTGN 458
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 26.2 bits (55), Expect = 5.5
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = -1
Query: 350 IQEESNQSDSNKED----SQEQALDIKPSMEPEK-ATNQVSLESDNYSISDVNSELPQPK 186
++ + N S+S SQE+ LD PS+ P K +++ + N S S+ K
Sbjct: 425 LKNDENSSNSGATSLTGRSQEEHLDFIPSLTPSKNYPSKIYSPNKNLDFSHTASKAETYK 484
Query: 185 VLNANEEPEIEKKDDPTSKEIERKATED 102
N+NE + K++ P S+ + E+
Sbjct: 485 --NSNELENV-KREQPFSELLPSTLQEE 509
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 25.8 bits (54), Expect = 7.3
Identities = 20/93 (21%), Positives = 40/93 (43%)
Frame = -1
Query: 353 DIQEESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELPQPKVLNA 174
D+ +E+ S + +S + + P+K + Q +S+ Y ++ K +N
Sbjct: 106 DLDDEAESVTSEESESDDSSY----GGTPKKRSRQK--KSNTYVQDEIRFSSRNSKGVNY 159
Query: 173 NEEPEIEKKDDPTSKEIERKATEDPEGNSKTES 75
NE+ E ++ +E+ ATE E T +
Sbjct: 160 NEDAYFESFEEEEEEEMYEYATEVSEEPEDTRA 192
>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 437
Score = 25.8 bits (54), Expect = 7.3
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -1
Query: 662 DTSNITLVIPEIKVDDTEMIEQKLDEQ 582
D + V+P ++ +TE++ QKLD++
Sbjct: 76 DDAGKPYVLPSVRQAETELLSQKLDKE 102
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.8 bits (54), Expect = 7.3
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Frame = -1
Query: 335 NQSDSNKE-DSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELPQPKV-----LNA 174
N++ N E D +QAL + E SL + SIS++N E P+ K LN
Sbjct: 541 NKTKVNHENDESDQALQEEKIEEGLLKNYYSSLIDSSTSISNINFEAPRYKTNIVHSLN- 599
Query: 173 NEEPEIEKKDDPTSKEIERKATEDPEGNSK 84
NE+ + + + TS++ + GN+K
Sbjct: 600 NEQKYVLEVKNGTSEKNPTRIVALENGNTK 629
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 7.3
Identities = 13/76 (17%), Positives = 29/76 (38%)
Frame = -1
Query: 371 KPDCQIDIQEESNQSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELPQ 192
K +I QEE D+ ++ +P EPE + +N + + + +
Sbjct: 355 KSQGEISEQEEDEYDDAESDEMHSPYSTHEPESEPEDQDEPSEKDDENKDVEEEQEQEQE 414
Query: 191 PKVLNANEEPEIEKKD 144
+ ++ E I ++
Sbjct: 415 EEQIDPEEAKRIALRE 430
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.8 bits (54), Expect = 7.3
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 5/97 (5%)
Frame = -1
Query: 353 DIQEESN----QSDSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELPQPK 186
++Q +SN S S+ E+ E L ++ E + ++E V E
Sbjct: 1180 NVQTDSNAAVPSSKSSTEEPNESVLSGHLDLDTEASPVVSTIEKTTKGDVSVTEEQQSAN 1239
Query: 185 VLNANEEPEIEKKDDP-TSKEIERKATEDPEGNSKTE 78
+ E+PEIE+ P ++ E+ N ++E
Sbjct: 1240 IDGQLEKPEIEESKKPDVLNQVSLSIEEEKPKNKESE 1276
>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 195
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = -1
Query: 758 SEVKTKIDSEQKMEIVTVPAAVDKTESDRKVEDTSNITLVIPEIKVDDTE 609
+++ +DS+ + P + K D V+ T + VIP+I + D +
Sbjct: 12 AKIANVLDSKGTIIPEAAPVMLKKPAKDESVDSTIQVGDVIPDITLPDED 61
>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -1
Query: 275 MEPEKATNQVSLESDNYSISDVNSELPQPKV 183
+ E N + +NYSISD++ + P P +
Sbjct: 93 LHSEHPENNIPPNDNNYSISDLSIKSPPPSL 123
>SPCC320.10 |srp72||signal recognition particle subunit
Srp72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 179 NANEEPEIEKKDDPTSKEIERKATEDPE 96
++N + K+ PT K KAT DP+
Sbjct: 509 SSNSSKKTRKRRKPTPKSFNPKATPDPQ 536
>SPAC17C9.10 |stm1||G-protein coupled receptor
Stm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 25.4 bits (53), Expect = 9.6
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +2
Query: 62 NYSFRILFYCSPQDLQLPSFQFPWMLGHLFSQFLALHL 175
+Y+F IL + + L PW+LG + FL +++
Sbjct: 223 SYAFSILVFPASDYLNYTYANLPWILGAFSTIFLDIYI 260
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 25.4 bits (53), Expect = 9.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 602 EQKLDEQSMITIKEETQGDSSE 537
++K DEQS + ET GD+SE
Sbjct: 384 QKKTDEQSNKKLLNETDGDNSE 405
>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 631
Score = 25.4 bits (53), Expect = 9.6
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Frame = -1
Query: 266 EKA-TNQVSLESDN----YSISDVNSELPQPKVLNANEEPEIEKKDDPTSK 129
EKA TN+V + ++ + SD++SE+P+ ++ N + ++ D+ K
Sbjct: 271 EKALTNKVKNQDEDTLYTFQFSDISSEIPEHQLANLDISADLSDSDNEIVK 321
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 9.6
Identities = 19/90 (21%), Positives = 36/90 (40%)
Frame = -1
Query: 788 TAEIKLEEAPSEVKTKIDSEQKMEIVTVPAAVDKTESDRKVEDTSNITLVIPEIKVDDTE 609
TAEI + ++ + E+K ++ + D+ +D I TE
Sbjct: 396 TAEISEKTEAKNADSEANLEEKSDVGEEKESKDENNKASLHKDVEEKDTKITNEDTGKTE 455
Query: 608 MIEQKLDEQSMITIKEETQGDSSETENKTE 519
+ + S+ ++ + DS ETE+K E
Sbjct: 456 TDVKAKETDSIEANDKDEKTDSKETEDKVE 485
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 25.4 bits (53), Expect = 9.6
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = -1
Query: 326 DSNKEDSQEQALDIKPSMEPEKATNQVSLESDNYSISDVNSELP-QPKVLNANEEPEIEK 150
D NK D +++ KP + + S DN + S + + P QP ++ + EP K
Sbjct: 80 DENKVDWKQE----KPKPDAPSFADNNSF--DNVNSSKLTNPSPVQPNIVKSESEPANSK 133
Query: 149 KDDPTSKEIERKATEDPEGNSKT 81
+++ KA E+ S T
Sbjct: 134 QNEVVEATSVEKAKENVAHESGT 156
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,636,980
Number of Sequences: 5004
Number of extensions: 50267
Number of successful extensions: 307
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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