Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13h03
(809 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 29 0.051
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 27 0.21
AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength rhodo... 27 0.21
DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GP... 24 1.4
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 23 2.5
DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex det... 22 5.8
DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex det... 22 5.8
DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex det... 22 5.8
DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex det... 22 5.8
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 22 5.8
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 22 5.8
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 22 5.8
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 22 5.8
AF000632-1|AAC61894.1| 452|Apis mellifera major royal jelly pro... 22 5.8
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 29.1 bits (62), Expect = 0.051
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 659 TSNITLVIPEIKVDDTEMIEQKLDEQSMITIKEETQGDS 543
T+N+T ++P +KV + +Q +Q TI G S
Sbjct: 960 TTNLTTILPPVKVQSQQQSQQSQQQQQQQTIVTNQAGKS 998
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 27.1 bits (57), Expect = 0.21
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +2
Query: 26 MKSQSQFQMIKLNYSFRILFYCSPQDLQLPSFQFPWMLGHLFSQFLAL 169
+++ S +I L S ++ +C + + + W+LG LF Q A+
Sbjct: 83 LRTPSNLFVINLAISNFLMMFCMSPPMVINCYYETWVLGPLFCQIYAM 130
>AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength
rhodopsin protein.
Length = 152
Score = 27.1 bits (57), Expect = 0.21
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +2
Query: 26 MKSQSQFQMIKLNYSFRILFYCSPQDLQLPSFQFPWMLGHLFSQFLAL 169
+++ S +I L S ++ +C + + + W+LG LF Q A+
Sbjct: 49 LRTPSNLFVINLAISDFLMMFCMSPPMVINCYYETWVLGPLFCQIYAM 96
>DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GPCR
protein.
Length = 381
Score = 24.2 bits (50), Expect = 1.4
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 26 MKSQSQFQMIKLNYSFRILFYCS-PQDLQLPSFQFPWMLG 142
M++ + + + L S IL P +L L Q+PW+LG
Sbjct: 71 MQTATNYYLFSLAISDLILLVLGLPNELSLFWQQYPWVLG 110
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 23.4 bits (48), Expect = 2.5
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +3
Query: 606 HFCIINFNFWYYQGDIRGVF 665
H C INF W + G+ +F
Sbjct: 181 HRCRINFGSWVHSGEEVNIF 200
>DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 22.2 bits (45), Expect = 5.8
Identities = 7/21 (33%), Positives = 12/21 (57%)
Frame = +2
Query: 665 PLFYQIQFYQLLPAQ*QFPFF 727
PL+Y I + + +P FP +
Sbjct: 100 PLYYNINYIEQIPVPVPFPVY 120
>DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 22.2 bits (45), Expect = 5.8
Identities = 7/21 (33%), Positives = 12/21 (57%)
Frame = +2
Query: 665 PLFYQIQFYQLLPAQ*QFPFF 727
PL+Y I + + +P FP +
Sbjct: 100 PLYYNINYIEQIPVPVPFPVY 120
>DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 22.2 bits (45), Expect = 5.8
Identities = 7/21 (33%), Positives = 12/21 (57%)
Frame = +2
Query: 665 PLFYQIQFYQLLPAQ*QFPFF 727
PL+Y I + + +P FP +
Sbjct: 100 PLYYNINYIEQIPVPVPFPVY 120
>DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 22.2 bits (45), Expect = 5.8
Identities = 7/21 (33%), Positives = 12/21 (57%)
Frame = +2
Query: 665 PLFYQIQFYQLLPAQ*QFPFF 727
PL+Y I + + +P FP +
Sbjct: 100 PLYYNINYIEQIPVPVPFPVY 120
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 5.8
Identities = 7/21 (33%), Positives = 12/21 (57%)
Frame = +2
Query: 665 PLFYQIQFYQLLPAQ*QFPFF 727
PL+Y I + + +P FP +
Sbjct: 333 PLYYNINYIEQIPVPVPFPVY 353
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 5.8
Identities = 7/21 (33%), Positives = 12/21 (57%)
Frame = +2
Query: 665 PLFYQIQFYQLLPAQ*QFPFF 727
PL+Y I + + +P FP +
Sbjct: 333 PLYYNINYIEQIPVPVPFPVY 353
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 5.8
Identities = 7/21 (33%), Positives = 12/21 (57%)
Frame = +2
Query: 665 PLFYQIQFYQLLPAQ*QFPFF 727
PL+Y I + + +P FP +
Sbjct: 333 PLYYNINYIEQIPVPVPFPVY 353
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 22.2 bits (45), Expect = 5.8
Identities = 7/21 (33%), Positives = 12/21 (57%)
Frame = +2
Query: 665 PLFYQIQFYQLLPAQ*QFPFF 727
PL+Y I + + +P FP +
Sbjct: 322 PLYYNINYIEQIPVPVPFPVY 342
>AF000632-1|AAC61894.1| 452|Apis mellifera major royal jelly
protein MRJP2 protein.
Length = 452
Score = 22.2 bits (45), Expect = 5.8
Identities = 7/20 (35%), Positives = 17/20 (85%)
Frame = -1
Query: 353 DIQEESNQSDSNKEDSQEQA 294
+IQ +NQ+D+N++++++ A
Sbjct: 422 NIQNTNNQNDNNQKNNKKNA 441
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,560
Number of Sequences: 438
Number of extensions: 3255
Number of successful extensions: 20
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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