Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13h01
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   4.1  
SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|c...    27   4.1  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    26   5.4  

>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 444 SPIYHHCSCWGKY*QIHSG*ALRAFSLIVVKPVQPFETTSSRIYENL 584
           S +   C CW  + +I    +L  F    V  +  FETTS+R+Y  +
Sbjct: 152 SSLIRICHCWTYFIRIMGLSSLNKF----VNLLHDFETTSNRVYSQI 194


>SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 186

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 229 RANYHLRFM*CKSKQPIYVLSDLNPLVCFSALP 327
           R N H +    ++ + I +L DL PLV + ALP
Sbjct: 30  RKNIHNQVYNVETGKTIQILQDLVPLVLYRALP 62


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 299 IHSCVFQLCLCSRYSKHW 352
           I+  +F+LC CS  + HW
Sbjct: 15  IYFIIFRLCCCSPQTSHW 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,242,466
Number of Sequences: 5004
Number of extensions: 66648
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)