Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13h01
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    26   0.47 
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    24   1.9  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    24   1.9  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    24   1.9  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.3  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 332 SRYSKHWLPISLN*PNLM*DFDERKIFSQLVTFPVLQ*SNISPLLLLGQI 481
           S+ +K WLP++ N  +L     +R+ +S  V F  L      P++  G +
Sbjct: 437 SQTNKTWLPVNENYKSLNLAAQKREYYSHYVAFKSLSYLKKQPVIANGSL 486


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -3

Query: 351 QCLEYREHRQS*KTHEWIEIRK 286
           +CL Y   +   K ++W ++RK
Sbjct: 140 RCLHYTVDKSKPKVYQWFDLRK 161


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -3

Query: 351 QCLEYREHRQS*KTHEWIEIRK 286
           +CL Y   +   K ++W ++RK
Sbjct: 145 RCLHYTVDKSKPKVYQWFDLRK 166


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -3

Query: 351 QCLEYREHRQS*KTHEWIEIRK 286
           +CL Y   +   K ++W ++RK
Sbjct: 145 RCLHYTVDKSKPKVYQWFDLRK 166


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +3

Query: 648 FCIYILGALLSC--ENKEDWTQAFTSLDMYIY*WRYQGQII 764
           F I IL + +S   E  ED   +  SLD   Y WR+   +I
Sbjct: 357 FLITILDSKVSARIEMNEDDNTSLVSLDKKQYTWRHTSVLI 397


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,269
Number of Sequences: 438
Number of extensions: 4709
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)