Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13g24
(558 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 29 0.46
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar... 29 0.61
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 27 2.5
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.5
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 2.5
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 2.5
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 26 4.3
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 25 5.7
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 25 5.7
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 25 5.7
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 25 5.7
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||... 25 10.0
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa... 25 10.0
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 25 10.0
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 29.1 bits (62), Expect = 0.46
Identities = 10/34 (29%), Positives = 24/34 (70%)
Frame = -2
Query: 350 DIAIQQDMNLSLDPRKQLMRKKLEDVEFESDADD 249
D++++QD + + +K ++K++ ++E +S ADD
Sbjct: 330 DLSVEQDSAIFKEQKKMKIQKRMRELETQSFADD 363
>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 28.7 bits (61), Expect = 0.61
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -2
Query: 317 LDPRKQLMRKKLEDVEFESDADDKNANSLNVINNTTKFINGIESALTFEK 168
+D ++K +VEF ++ N+L N T+F+N +ES F +
Sbjct: 608 IDAENLRIKKATTEVEFTEVTPAEDQNALASSNIETEFLNALESVSEFNE 657
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 26.6 bits (56), Expect = 2.5
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -2
Query: 473 PAKSLRAGSILVHINCFKLSNLELMAEKENSVCIVFQK 360
P K R G+ NC +LEL EK ++C FQK
Sbjct: 40 PCKFFRQGTCTSGKNCIFSHDLELATEK--TICKYFQK 75
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 26.6 bits (56), Expect = 2.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 263 SDADDKNANSLNVINNTTKFINGIESAL 180
SD DD ++NS N N+TT+ N + L
Sbjct: 981 SDIDDNDSNSSNTSNHTTENANAQQRKL 1008
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 26.6 bits (56), Expect = 2.5
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -2
Query: 308 RKQLMRKKLEDVEFESDADDKNANSLNVINNTTKFINGIESALTFEKDFN 159
RKQ+ R KLE+ F+ DD + TK + EKD N
Sbjct: 834 RKQIERTKLEETSFKKKIDDAVLANNEQKLKLTKLNFQVNELEQLEKDIN 883
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.6 bits (56), Expect = 2.5
Identities = 9/45 (20%), Positives = 26/45 (57%)
Frame = -2
Query: 254 DDKNANSLNVINNTTKFINGIESALTFEKDFNSLKKTYEKIMKSI 120
++K ++S + + +SAL+F+KD+ ++ ++++ S+
Sbjct: 1024 EEKESSSKELAKQLEDAVREKDSALSFKKDYEKIRSDADRVITSL 1068
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 320 SLDPRKQLMRKKLEDVEFESDADDKNANSLN 228
+L+ KQ + KL++ E+D + NSLN
Sbjct: 1363 ALEKEKQELETKLQETAKETDTFKQQVNSLN 1393
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 189 FNAIYKFCRIIDHIQ*ICIFVICIAFKFHIFEFL 290
FN I CR+I I I + I F F++ F+
Sbjct: 276 FNIIRLACRVIADIPQITLIFISFLFSFYVLIFI 309
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 25.4 bits (53), Expect = 5.7
Identities = 12/51 (23%), Positives = 26/51 (50%)
Frame = -2
Query: 335 QDMNLSLDPRKQLMRKKLEDVEFESDADDKNANSLNVINNTTKFINGIESA 183
++ + LD + Q+ ++ + D + NS++ + N T+ +G ESA
Sbjct: 614 ENSSAPLDLQSQICMAMVDQLFHSKVVLDPSFNSIDEVTNVTRKFSGFESA 664
>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
termination factor Reb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 504
Score = 25.4 bits (53), Expect = 5.7
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +1
Query: 460 RLFAGNLLQKST--DSKSKYYHARKCAN 537
R+F NL +K + D+KS Y+H R+ N
Sbjct: 281 RMFYSNLYKKLSHRDAKSIYHHVRRAYN 308
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.4 bits (53), Expect = 5.7
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -2
Query: 326 NLSLDPRKQLMRKKLEDVEFESDADDKN 243
+L++D ++ LED+ F++DADD N
Sbjct: 98 DLNIDVESEVF--DLEDINFQNDADDIN 123
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 5.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 245 NANSLNVINNTTKFINGIESALTFE 171
N S+NV+NN KF + + +TFE
Sbjct: 5 NILSVNVLNNPAKFSDPYKFEITFE 29
>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
1|||Manual
Length = 113
Score = 24.6 bits (51), Expect = 10.0
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 282 EFLSHQLLPWIQAKIHI 332
E +H LPW +AK HI
Sbjct: 52 ELNTHPFLPWRKAKFHI 68
>SPAC4D7.09 |tif223||translation initiation factor
eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 24.6 bits (51), Expect = 10.0
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Frame = +2
Query: 230 SMNLHFCHLHRFQIPHLRVSF----SSIASVDPS*DSYLVE*QYQRQAFETQCIQNFPFL 397
++N + H F H + SI+S+ YLV+ QYQ+ + IQ F
Sbjct: 242 TLNTNLSDAHIFVFKHWVIDLIREKESISSIRGDLIPYLVKCQYQKSFTVRENIQRFLSS 301
Query: 398 PSILD 412
P+ +D
Sbjct: 302 PNNID 306
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 24.6 bits (51), Expect = 10.0
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = +3
Query: 306 PWIQAKIHILLNSNINVRLLKHNAYRIFL 392
PW+ A H+ L ++ + ++N ++FL
Sbjct: 932 PWVYAHHHVQLRIGLDNEISQNNEAKVFL 960
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,872,300
Number of Sequences: 5004
Number of extensions: 34383
Number of successful extensions: 127
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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