Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13g23
(463 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 28 0.80
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 25 4.3
SPAC2F3.02 |||ER protein translocation subcomplex subunit|Schizo... 25 4.3
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 25 5.6
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 25 5.6
SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom... 25 7.4
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 25 7.4
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 25 7.4
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe... 24 9.8
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 24 9.8
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 27.9 bits (59), Expect = 0.80
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +1
Query: 34 GTTARSAEPSSAASDTAVPTAVVRAGYSSTVAVHISALPTRC*TISTSRVHATGTNLTA 210
GTT + + + T V GY+ T ++ PT T +T+ V T T +TA
Sbjct: 822 GTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTA 880
Score = 27.9 bits (59), Expect = 0.80
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +1
Query: 34 GTTARSAEPSSAASDTAVPTAVVRAGYSSTVAVHISALPTRC*TISTSRVHATGTNLTA 210
GTT + + + T V GY+ T ++ PT T +T+ V T T +TA
Sbjct: 866 GTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTA 924
Score = 27.9 bits (59), Expect = 0.80
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +1
Query: 34 GTTARSAEPSSAASDTAVPTAVVRAGYSSTVAVHISALPTRC*TISTSRVHATGTNLTA 210
GTT + + + T V GY+ T ++ PT T +T+ V T T +TA
Sbjct: 910 GTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTA 968
Score = 27.9 bits (59), Expect = 0.80
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +1
Query: 34 GTTARSAEPSSAASDTAVPTAVVRAGYSSTVAVHISALPTRC*TISTSRVHATGTNLTA 210
GTT + + + T V GY+ T ++ PT T +T+ V T T +TA
Sbjct: 954 GTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTA 1012
Score = 27.9 bits (59), Expect = 0.80
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +1
Query: 34 GTTARSAEPSSAASDTAVPTAVVRAGYSSTVAVHISALPTRC*TISTSRVHATGTNLTA 210
GTT + + + T V GY+ T ++ PT T +T+ V T T +TA
Sbjct: 998 GTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTA 1056
Score = 27.9 bits (59), Expect = 0.80
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +1
Query: 34 GTTARSAEPSSAASDTAVPTAVVRAGYSSTVAVHISALPTRC*TISTSRVHATGTNLTA 210
GTT + + + T V GY+ T ++ PT T +T+ V T T +TA
Sbjct: 1042 GTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTA 1100
Score = 25.0 bits (52), Expect = 5.6
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Frame = +1
Query: 34 GTTARSAEPSSAASDTAVPTAVVRAGYSSTVAVHISALPTRC*TISTSRVHATGTNLTAA 213
GTT + + + T V GY+ T ++ PT T +T+ V T T +
Sbjct: 1086 GTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGTATGTTTVVINTPTTTGSE 1145
Query: 214 IHSIGQGTAWA-RHRPLTTQTAI 279
+ T A LTT T +
Sbjct: 1146 VLPTTGATGTAGTETQLTTATEV 1168
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 25.4 bits (53), Expect = 4.3
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 189 NRDQLDRSNPFYRPGDRMGQT*APDNPNSNYVQACPIAAINFQLILNTETW 341
N +LDRS YR + QT +P+S+ + P I F+L+L T+ +
Sbjct: 970 NAARLDRSGDSYRTV-KSNQT-VYIHPSSSVAEKKPKVIIYFELVLTTKEY 1018
>SPAC2F3.02 |||ER protein translocation subcomplex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 25.4 bits (53), Expect = 4.3
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 234 DRMGQT*APDNPNSNYVQACPIAAINFQLILNTETWTVSILT 359
++M QT Y +A + + QL LN TW SILT
Sbjct: 63 NKMKQTANEAFKRKKYEEAKKLYGLALQLALNRCTWEPSILT 104
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.0 bits (52), Expect = 5.6
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 266 PKQQLRTGMSNC-GD*LPIDFKYGNLDSFDINNSL 367
P Q+ SN G LP+D Y N SF ++ SL
Sbjct: 549 PSSQVEKSTSNSKGSMLPLDTLYNNKLSFRLDESL 583
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 25.0 bits (52), Expect = 5.6
Identities = 14/44 (31%), Positives = 17/44 (38%)
Frame = -2
Query: 294 DMPVRNCCLGCQGPMSGPCGPLAYRMDCCGQVGPCCVHARGAYC 163
D P + C C+ P G C D C V C H A+C
Sbjct: 17 DTPKDDVCGICRVPFDGCCPQCTSPGDNCPIVWGKCKHIFHAHC 60
>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 24.6 bits (51), Expect = 7.4
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 311 LPIDFKYGNLDSFDIN 358
+P+DF GN+ +FDI+
Sbjct: 9 IPLDFDLGNMAAFDIS 24
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 24.6 bits (51), Expect = 7.4
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -2
Query: 255 PMSGPCGPLAYRMDCCGQVGPCCVHARGAY 166
P G CG + Y C VG C+++ Y
Sbjct: 28 PRYGTCGGIYYDGPTCCVVGSSCIYSNPWY 57
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 24.6 bits (51), Expect = 7.4
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = -2
Query: 213 CCGQVGPCCVHARGAYCSASCW 148
CC Q G V+ G+ + CW
Sbjct: 1164 CCYQFGAVFVNGEGSMVNKECW 1185
>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 537
Score = 24.2 bits (50), Expect = 9.8
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 274 LFGLSGAYVWPMRSPGL 224
LFGL GAY W + GL
Sbjct: 393 LFGLCGAYYWSPKMFGL 409
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 24.2 bits (50), Expect = 9.8
Identities = 9/35 (25%), Positives = 17/35 (48%)
Frame = -3
Query: 230 WPIEWIAAVKLVPVACTREVLIVQHRVGSAEICTA 126
W + + V+ +P A T E+ + G +CT+
Sbjct: 316 WDLRTVHTVRPLPAATTPELTTSKRDFGVTNVCTS 350
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,703,033
Number of Sequences: 5004
Number of extensions: 30814
Number of successful extensions: 88
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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