Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13g21
         (659 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB039903-1|BAB17050.1|  842|Homo sapiens interferon-responsive f...    37   0.073
BC013981-1|AAH13981.1|  932|Homo sapiens RNA binding motif prote...    30   6.4  
BC012787-1|AAH12787.1|  932|Homo sapiens RNA binding motif prote...    30   6.4  
AL109827-23|CAB87611.1|  932|Homo sapiens RNA binding motif prot...    30   6.4  
AJ289772-1|CAC20441.1|  932|Homo sapiens RNA binding motif prote...    30   6.4  
AF393214-1|AAM73682.1|  932|Homo sapiens swan protein.                 30   6.4  
AF345335-1|AAL83755.1|  932|Homo sapiens SWAN protein.                 30   6.4  
AF345332-1|AAL83752.1|  932|Homo sapiens SWAN protein.                 30   6.4  
AB018308-1|BAA34485.2|  952|Homo sapiens KIAA0765 protein protein.     30   6.4  
AB015336-1|BAA34794.1|  376|Homo sapiens HRIHFB2091 protein.           30   6.4  

>AB039903-1|BAB17050.1|  842|Homo sapiens interferon-responsive
           finger protein 1 long form protein.
          Length = 842

 Score = 36.7 bits (81), Expect = 0.073
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = +3

Query: 84  RMQWLCVNIVDVLTFWT*GAELTRRVRRCASIVSRQRFLSFVMITKVTLFILRMVT 251
           RM  +C  + DV ++W     LTRR RR + + +R+   S  M +K+ L +   VT
Sbjct: 313 RMLRVCRELTDVQSYWAIQGSLTRRERRASGVRTRRSQGSSAMASKILLNVQEEVT 368


>BC013981-1|AAH13981.1|  932|Homo sapiens RNA binding motif protein
           12 protein.
          Length = 932

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 613 GPVKVGDPAKVPPCTSKPGLGCCLLRKKPIEVSLGDILD 497
           GP+ +G P      + KPG     ++  P  VS+ +ILD
Sbjct: 836 GPIHIGGPPGFASSSGKPGPTVIKVQNMPFTVSIDEILD 874


>BC012787-1|AAH12787.1|  932|Homo sapiens RNA binding motif protein
           12 protein.
          Length = 932

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 613 GPVKVGDPAKVPPCTSKPGLGCCLLRKKPIEVSLGDILD 497
           GP+ +G P      + KPG     ++  P  VS+ +ILD
Sbjct: 836 GPIHIGGPPGFASSSGKPGPTVIKVQNMPFTVSIDEILD 874


>AL109827-23|CAB87611.1|  932|Homo sapiens RNA binding motif protein
           12 protein.
          Length = 932

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 613 GPVKVGDPAKVPPCTSKPGLGCCLLRKKPIEVSLGDILD 497
           GP+ +G P      + KPG     ++  P  VS+ +ILD
Sbjct: 836 GPIHIGGPPGFASSSGKPGPTVIKVQNMPFTVSIDEILD 874


>AJ289772-1|CAC20441.1|  932|Homo sapiens RNA binding motif protein
           12 protein.
          Length = 932

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 613 GPVKVGDPAKVPPCTSKPGLGCCLLRKKPIEVSLGDILD 497
           GP+ +G P      + KPG     ++  P  VS+ +ILD
Sbjct: 836 GPIHIGGPPGFASSSGKPGPTVIKVQNMPFTVSIDEILD 874


>AF393214-1|AAM73682.1|  932|Homo sapiens swan protein.
          Length = 932

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 613 GPVKVGDPAKVPPCTSKPGLGCCLLRKKPIEVSLGDILD 497
           GP+ +G P      + KPG     ++  P  VS+ +ILD
Sbjct: 836 GPIHIGGPPGFASSSGKPGPTVIKVQNMPFTVSIDEILD 874


>AF345335-1|AAL83755.1|  932|Homo sapiens SWAN protein.
          Length = 932

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 613 GPVKVGDPAKVPPCTSKPGLGCCLLRKKPIEVSLGDILD 497
           GP+ +G P      + KPG     ++  P  VS+ +ILD
Sbjct: 836 GPIHIGGPPGFASSSGKPGPTVIKVQNMPFTVSIDEILD 874


>AF345332-1|AAL83752.1|  932|Homo sapiens SWAN protein.
          Length = 932

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 613 GPVKVGDPAKVPPCTSKPGLGCCLLRKKPIEVSLGDILD 497
           GP+ +G P      + KPG     ++  P  VS+ +ILD
Sbjct: 836 GPIHIGGPPGFASSSGKPGPTVIKVQNMPFTVSIDEILD 874


>AB018308-1|BAA34485.2|  952|Homo sapiens KIAA0765 protein protein.
          Length = 952

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 613 GPVKVGDPAKVPPCTSKPGLGCCLLRKKPIEVSLGDILD 497
           GP+ +G P      + KPG     ++  P  VS+ +ILD
Sbjct: 856 GPIHIGGPPGFASSSGKPGPTVIKVQNMPFTVSIDEILD 894


>AB015336-1|BAA34794.1|  376|Homo sapiens HRIHFB2091 protein.
          Length = 376

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 613 GPVKVGDPAKVPPCTSKPGLGCCLLRKKPIEVSLGDILD 497
           GP+ +G P      + KPG     ++  P  VS+ +ILD
Sbjct: 280 GPIHIGGPPGFASSSGKPGPTVIKVQNMPFTVSIDEILD 318


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,423,897
Number of Sequences: 237096
Number of extensions: 2058306
Number of successful extensions: 5125
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5125
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7422585720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)