Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13g20
         (319 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   1.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   2.1  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   4.7  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   4.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   6.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   6.3  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 258 ELTYRNSKLCKQIFDDSEVKSAHLR 184
           E TY+   LC++ FD   +  +HLR
Sbjct: 59  EKTYQ-CLLCQKAFDQKNLYQSHLR 82


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 282 KKQQNFCLELTYRNSKLCKQIF 217
           KKQ + C  L YRN ++   +F
Sbjct: 565 KKQPSDCDTLEYRNGEVTTPLF 586


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +3

Query: 255 VLSRNFVVFFYLLNS 299
           V+S+N V+FF L+N+
Sbjct: 311 VMSKNGVLFFGLVNN 325


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +3

Query: 255 VLSRNFVVFFYLLNS 299
           ++S+N V+FF L+N+
Sbjct: 311 IMSKNGVLFFGLMNN 325


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 78  LTWPLFKMGISLRI 37
           L W LF + +SLRI
Sbjct: 119 LAWALFYLLVSLRI 132


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 78  LTWPLFKMGISLRI 37
           L W LF + +SLRI
Sbjct: 172 LAWALFYLLVSLRI 185


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,553
Number of Sequences: 438
Number of extensions: 1426
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)