Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13g19
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    30   0.22 
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    27   1.2  
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c...    27   1.2  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    27   1.6  
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    27   1.6  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    27   2.1  
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    27   2.1  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    26   2.7  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    26   3.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   3.6  
SPAPB2B4.07 |||ubiquitin family protein, human UBTD1 homolog|Sch...    25   4.8  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    25   4.8  
SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom...    25   6.3  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   8.4  
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    25   8.4  
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.4  
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe...    25   8.4  
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ...    25   8.4  

>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -3

Query: 225 GDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQSFA--ETWNKSPKSPGENSSHSKRLAVK 52
           G+RP    D+FEE     D+  +   +V RR  F   E  +   +  GE +  SKR  + 
Sbjct: 151 GNRPLSDIDSFEEPGFGLDEGEELNDEVVRRMHFGGFEDSDAENEKEGEGAHKSKREVMS 210

Query: 51  KVIS 40
           ++I+
Sbjct: 211 EIIA 214


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/55 (21%), Positives = 26/55 (47%)
 Frame = -3

Query: 315 ELTSYKNPKTWKKSISNFFRNQLRSTKSNEGDRPSGSKDNFEEKEITPDQKWQSL 151
           ++++   P     S+++FF  +  ST S   +    S+DN ++  +    +W  L
Sbjct: 521 QISTSSTPAHDNLSLNDFFEPREASTPSESSNSSIESEDNLDKAVLNKQSQWHDL 575


>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -3

Query: 270 SNFFRNQLRSTKSNEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQS 127
           S FFR   +S   N  + P  + D  E K   PD+++  L + ++ +S
Sbjct: 34  STFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKS 81


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -3

Query: 249 LRSTKSNEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQSFA 121
           L   K N   R S S D+F        ++ QSLG+   RQSF+
Sbjct: 92  LEVNKKNNFYRRSSSTDDFGISHARSRKEIQSLGRPHTRQSFS 134


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +3

Query: 330 LQQELCLVSFGRYHCFWITYHFQAESLLGTTFPVFFSVLNFFTIQ 464
           L   +  V+ GRY C W++ HF   S++     +F+ +L F++++
Sbjct: 250 LSVSMLKVAPGRYECLWLSCHFY-YSIIYLLNSMFY-LLTFYSLR 292


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -3

Query: 336 AEGTDSLELTSYKNPKTWKKSISNFF-RNQLRSTKSNEGDRPSGSKDNFEEKEITPDQ 166
           AE +++L ++S K     KK   N   +NQ+   +S E + P G K+     E+  D+
Sbjct: 42  AEKSENLAVSSEKTTSKKKKGKKNKGNKNQVSDDESQELESPQGPKELTAVTELDDDE 99


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 18/80 (22%), Positives = 34/80 (42%)
 Frame = -3

Query: 291 KTWKKSISNFFRNQLRSTKSNEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQSFAETW 112
           K W      +F NQL   K++  D  S S ++F      P+ ++  L KV ++ + + + 
Sbjct: 224 KEWTNREEKYFENQLHLVKASSSD-VSNSSNSF------PENRYPKLTKVEKQMTKSVSK 276

Query: 111 NKSPKSPGENSSHSKRLAVK 52
                   +N   +K L  +
Sbjct: 277 TSQTDKDEDNLDFTKNLLTR 296


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
 Frame = -3

Query: 291 KTWKKSISNFFRNQL--RS--TKSNEGDRPSGSKDNFEEKEITPDQKWQSLGK-VFRRQS 127
           K  + ++S FF +    RS     N  D P   K+  + +     Q  QS  + +F+  S
Sbjct: 24  KLHRSTVSKFFEHPTSKRSIGVTENGNDSPEAFKNELDNRNNADSQSLQSSTESLFKADS 83

Query: 126 ---FAETWNKSPKSPGENSSHS 70
                +  +K P+SP  NS H+
Sbjct: 84  EDYLCKKVSKGPESPRVNSFHN 105


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 144 VFRRQSFAETWNKSPKSPGENSSHSKRLAVK 52
           +F   SF+ +  ++P SPG N   S+  AVK
Sbjct: 143 LFPGSSFSASSQQNPSSPGSNDIKSEFAAVK 173


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -1

Query: 221  IGLQAVKIILRKKRSLLTKSGNLW 150
            +  +  K+ILR  +S++TK  ++W
Sbjct: 1969 VNTEKTKLILRPDKSIITKENHVW 1992


>SPAPB2B4.07 |||ubiquitin family protein, human UBTD1
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -3

Query: 255 NQLRSTKSNEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQSFAET 115
           NQ+    +N G++PSGS      K  TP+          RR  F ET
Sbjct: 8   NQVAGVANNGGEQPSGSNILRLPKLYTPNPLLTKEEVEVRRNEFWET 54


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 204 KDNFEEKEITPDQKWQSLGKVFRRQSFAETWNKSPK 97
           K+NF+  EI  D  W  +  ++  + F    N  PK
Sbjct: 355 KENFKNFEIPVDTFWSDIDYMYEYRDFTVESNAFPK 390


>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 304

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 357 FGRYHCFWITY 389
           FG Y CFW++Y
Sbjct: 155 FGSYGCFWLSY 165


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 405 SQPENDTLSKSNDICQKKPNKVPAEG 328
           SQ E   ++  N IC  KPN V A+G
Sbjct: 588 SQQEEYIINLVNRICMLKPNLVFAQG 613


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 249 LRSTKSNEGDRPSGSKDNFEEKEITPDQ 166
           ++ST SN  ++  G+ D FEE++I  D+
Sbjct: 335 IQSTCSNIEEKHLGTCDTFEERQIGGDR 362


>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 381 SKSNDICQKKPNKVPAEGTDSLELTSYKNPK 289
           SKS D  +K+P  VP +GT  +   ++K  K
Sbjct: 81  SKSKDSSKKEPVVVPKKGTPKIFQENHKVKK 111


>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 316 QAVCSFSRNFVWFLLADII 372
           Q++C F +   W L ADII
Sbjct: 134 QSLCIFEKKAAWVLYADII 152


>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 425

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = -3

Query: 381 SKSNDICQKKPNKVPAEGTDSLELTSYKNPKTWKKSISNFFRNQLRSTKSNEGDRP 214
           S S+ + Q K  K    G+D  +L   K+     +SI     NQ+ ST   +   P
Sbjct: 284 SFSSMLAQVKKEKAENNGSDGYDLQPTKSQLELYQSILRKRANQVSSTSLTKSSSP 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,009,214
Number of Sequences: 5004
Number of extensions: 41744
Number of successful extensions: 133
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)