Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13g17
         (788 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC125165-1|AAI25166.1|  470|Homo sapiens solute carrier family 7...    33   0.89 
AK055815-1|BAB71021.1|  470|Homo sapiens protein ( Homo sapiens ...    33   0.89 
AJ417661-1|CAD10393.1|  470|Homo sapiens amino acid transporter ...    33   0.89 

>BC125165-1|AAI25166.1|  470|Homo sapiens solute carrier family 7,
           (cationic amino acid transporter, y+ system) member 13
           protein.
          Length = 470

 Score = 33.5 bits (73), Expect = 0.89
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = -1

Query: 452 VVILGLCEQPRCHYIFVLMAVLSFGLYL--LIHFRFTL 345
           +V++ L + P  HY++VL+ VLS  L+   LIHF+  L
Sbjct: 409 LVVIPLVKSPNVHYVYVLLLVLSGLLFYIPLIHFKIRL 446


>AK055815-1|BAB71021.1|  470|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31253 fis, clone KIDNE2005477, weakly similar to
           Drosophila melanogaster minidiscs (mnd) mRNA. ).
          Length = 470

 Score = 33.5 bits (73), Expect = 0.89
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = -1

Query: 452 VVILGLCEQPRCHYIFVLMAVLSFGLYL--LIHFRFTL 345
           +V++ L + P  HY++VL+ VLS  L+   LIHF+  L
Sbjct: 409 LVVIPLVKSPNVHYVYVLLLVLSGLLFYIPLIHFKIRL 446


>AJ417661-1|CAD10393.1|  470|Homo sapiens amino acid transporter
           protein.
          Length = 470

 Score = 33.5 bits (73), Expect = 0.89
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = -1

Query: 452 VVILGLCEQPRCHYIFVLMAVLSFGLYL--LIHFRFTL 345
           +V++ L + P  HY++VL+ VLS  L+   LIHF+  L
Sbjct: 409 LVVIPLVKSPNVHYVYVLLLVLSGLLFYIPLIHFKIRL 446


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,679,169
Number of Sequences: 237096
Number of extensions: 1849458
Number of successful extensions: 2562
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2562
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9646050614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)