Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13g17
         (788 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   5.7  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   9.9  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   9.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.9  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 589 IKRAESLSVILLALYIFYLY 530
           +K  E    ILL  YI++LY
Sbjct: 111 LKEIEDTEPILLIAYIYHLY 130


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 135 LYLSVFLTLSSSVARCHIVMPLFPLW 58
           LYLS F+ +  S+ R + V+    LW
Sbjct: 122 LYLSSFVLVCISMDRYYAVIKPLQLW 147


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
          protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 61 LVFFLLLYKTTRP 23
          L+FFLLL   TRP
Sbjct: 7  LLFFLLLSSCTRP 19


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 525 LYFVTVFEFSVAFNSII*IYY 463
           ++  T+F FS     I+ IYY
Sbjct: 210 IFVATIFTFSYCIPMILIIYY 230


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
          protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 61 LVFFLLLYKTTRP 23
          L+FFLLL   TRP
Sbjct: 7  LLFFLLLSSCTRP 19


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,542
Number of Sequences: 438
Number of extensions: 4019
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)