Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13g12
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    25   4.4  
SPAC1782.11 |met14||adenylyl-sulfate kinase |Schizosaccharomyces...    24   7.7  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    24   7.7  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    24   7.7  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 67  PLTKKKKKFSQTILVKNIQIHKT 135
           P+ +KK+KF + +  KNI +  T
Sbjct: 533 PIPEKKRKFQEVLQSKNILVSST 555


>SPAC1782.11 |met14||adenylyl-sulfate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 191 LSPDLVISTLXSQLVTCVKKII 256
           +SP++V+S+    +  CV+KI+
Sbjct: 169 ISPEIVVSSHTQSIEECVEKIV 190


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = +2

Query: 140 YHFQLYYITLFCFVNTYLSPDLVISTLXSQLVTC 241
           YH ++ Y+  FCF ++ +      S +    V C
Sbjct: 793 YHLRMAYLEKFCFKDSTIPKSNDFSNITEYYVKC 826


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 89  NSAKPSL*KIYKFIKQSYHFQLYYITL 169
           NS++PSL  +YK  K   H   Y I +
Sbjct: 179 NSSRPSLAVLYKDSKSIVHLSTYKINV 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,010,191
Number of Sequences: 5004
Number of extensions: 13739
Number of successful extensions: 30
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)