Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13g12
         (401 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex det...    20   9.2  
DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex det...    20   9.2  
DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex det...    20   9.2  
DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex det...    20   9.2  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    20   9.2  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    20   9.2  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    20   9.2  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    20   9.2  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    20   9.2  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    20   9.2  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    20   9.2  

>DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +3

Query: 72  NKKKKKIQPNHPCKKYT 122
           N+K+K ++    CK+Y+
Sbjct: 24  NEKEKLLEERTSCKRYS 40


>DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +3

Query: 72  NKKKKKIQPNHPCKKYT 122
           N+K+K ++    CK+Y+
Sbjct: 24  NEKEKLLEERTSCKRYS 40


>DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +3

Query: 72  NKKKKKIQPNHPCKKYT 122
           N+K+K ++    CK+Y+
Sbjct: 24  NEKEKLLEERTSCKRYS 40


>DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +3

Query: 72  NKKKKKIQPNHPCKKYT 122
           N+K+K ++    CK+Y+
Sbjct: 24  NEKEKLLEERTSCKRYS 40


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +3

Query: 72  NKKKKKIQPNHPCKKYT 122
           N+K+K ++    CK+Y+
Sbjct: 257 NEKEKLLEERTSCKRYS 273


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +3

Query: 72  NKKKKKIQPNHPCKKYT 122
           N+K+K ++    CK+Y+
Sbjct: 257 NEKEKLLEERTSCKRYS 273


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +3

Query: 72  NKKKKKIQPNHPCKKYT 122
           N+K+K ++    CK+Y+
Sbjct: 257 NEKEKLLEERTSCKRYS 273


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +3

Query: 72  NKKKKKIQPNHPCKKYT 122
           N+K+K ++    CK+Y+
Sbjct: 257 NEKEKLLEERTSCKRYS 273


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +3

Query: 72  NKKKKKIQPNHPCKKYT 122
           N+K+K ++    CK+Y+
Sbjct: 257 NEKEKLLEERTSCKRYS 273


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +3

Query: 72  NKKKKKIQPNHPCKKYT 122
           N+K+K ++    CK+Y+
Sbjct: 246 NEKEKLLEERTSCKRYS 262


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 135 CFMNLYIFYKDGLAEFFFF 79
           C+MN+Y       A F+FF
Sbjct: 71  CWMNVYYIVILAWAIFYFF 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,044
Number of Sequences: 438
Number of extensions: 1081
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)