Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13g09
         (320 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc...    24   5.0  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    24   6.6  
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    23   8.7  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    23   8.7  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      23   8.7  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    23   8.7  

>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 158 RSISNRYLPPRYMDTMMAPTKSAR 229
           R + N+Y+PP Y  ++  P K  +
Sbjct: 4   RKVLNKYIPPDYDPSIRPPKKKKK 27


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +2

Query: 83  INVTLKQRVSQPRPVKFAIGTSLFIRSISNRYLPPRYMDTMMAPTKSARP 232
           +  T      QP P+  +  T   IRS S   L P+ + T  + TK  RP
Sbjct: 275 VKTTTSNASRQPSPLVSSKSTDNIIRSHSPVLLTPQTLST--SETKHIRP 322


>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 193 YGHHDGSYQKC*TGYCHCF 249
           Y HH GS++    G+C  F
Sbjct: 245 YWHHPGSFRNGFKGFCSVF 263


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +2

Query: 125 VKFAIGTSLFIRSISNRYLPPRYMDTMMAPTKSARPATAIV 247
           ++F  GT++ I + + RY P +  DT+ +    + P+   V
Sbjct: 339 IEFEDGTTVVIDAKTRRYEPVKRQDTLASNHVPSAPSNESV 379


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 167 SNRYLPPRYMD 199
           +N YLPP YMD
Sbjct: 472 NNSYLPPSYMD 482


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 113 QPRPVKFAIGTSLFIRSISNRYLPPRY 193
           +PRP ++  G  +  RS+ +R  P RY
Sbjct: 479 EPRPNEWIPGLEILHRSVLSRLNPLRY 505


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,071,650
Number of Sequences: 5004
Number of extensions: 16631
Number of successful extensions: 31
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)