Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13g09
         (320 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0096 - 41059668-41059886,41059978-41060154,41060575-410607...    27   3.3  

>01_07_0096 -
           41059668-41059886,41059978-41060154,41060575-41060778,
           41060874-41061089,41061698-41061961,41062413-41062654,
           41062728-41062851,41062852-41062991,41063349-41063397,
           41063735-41063891,41063982-41064130,41064267-41064299,
           41064497-41064575,41064961-41065040,41065438-41065560
          Length = 751

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -2

Query: 253 IENNGSSRSSTFGRSHHGVHISWRQISIRNGPYEQ*RAYGEFNW 122
           + ++G + SS+     HGV  S  +++  + PY    AY   +W
Sbjct: 1   MSSSGGASSSSSSGERHGVGRSPNRLAAEHSPYLLQHAYNPVDW 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,645,882
Number of Sequences: 37544
Number of extensions: 100409
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)