Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13g07
(703 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC044587-1|AAH44587.1| 195|Homo sapiens LSM12 homolog (S. cerev... 142 8e-34
AK055218-1|BAB70877.1| 195|Homo sapiens protein ( Homo sapiens ... 142 1e-33
BC105288-1|AAI05289.1| 131|Homo sapiens LSM12 protein protein. 100 4e-21
AL049712-6|CAI22420.2| 906|Homo sapiens transmembrane channel-l... 36 0.11
AF417580-1|AAL86401.2| 906|Homo sapiens transmembrane channel-l... 36 0.11
BC115376-1|AAI15377.1| 954|Homo sapiens C2orf16 protein protein. 32 2.3
AL834384-1|CAD39047.1| 845|Homo sapiens hypothetical protein pr... 32 2.3
AC074091-7|AAX93198.1| 939|Homo sapiens unknown protein. 32 2.3
BC025396-1|AAH25396.1| 538|Homo sapiens spermatogenesis associa... 31 4.0
AK057468-1|BAB71501.1| 522|Homo sapiens protein ( Homo sapiens ... 31 4.0
BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein. 30 7.0
BC041155-1|AAH41155.1| 311|Homo sapiens SRRM2 protein protein. 30 7.0
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 30 7.0
AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein pro... 30 7.0
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 30 7.0
BC045671-1|AAH45671.1| 412|Homo sapiens chromosome 2 open readi... 30 9.2
AK127467-1|BAC86992.1| 346|Homo sapiens protein ( Homo sapiens ... 30 9.2
AC013403-7|AAX93171.1| 412|Homo sapiens unknown protein. 30 9.2
>BC044587-1|AAH44587.1| 195|Homo sapiens LSM12 homolog (S.
cerevisiae) protein.
Length = 195
Score = 142 bits (345), Expect = 8e-34
Identities = 72/177 (40%), Positives = 113/177 (63%)
Frame = -3
Query: 617 MSAVVSDCFTIGSIVATRTCYNENIEGEVLAFDPQTKMLILKCQSSSGNPKRHDVNIVNL 438
M+A + F++GS V+ RTC + ++GEV+AFD Q+KML LKC SSSG P D+ ++NL
Sbjct: 1 MAAPPGEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINL 60
Query: 437 SLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLFMAI 258
VS+V+I + + P P SLN+ +L ++ R E K A+SA + EGQ+LF I
Sbjct: 61 QYVSEVEIINDRTETPRPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLFQTI 120
Query: 257 ARVIDDVSWAGQSIRVYNNKIHQVMITPPYKVDDVIGEKDSQSYNYIKKFVERHWRD 87
+ I D W ++I V + +V+ITPPY+V++ G K+ + ++++K VE+H+RD
Sbjct: 121 HKTIKDCKWQEKNIVV----MEEVVITPPYQVENCKG-KEGSALSHVRKIVEKHFRD 172
>AK055218-1|BAB70877.1| 195|Homo sapiens protein ( Homo sapiens
cDNA FLJ30656 fis, clone DFNES2000292. ).
Length = 195
Score = 142 bits (344), Expect = 1e-33
Identities = 72/177 (40%), Positives = 113/177 (63%)
Frame = -3
Query: 617 MSAVVSDCFTIGSIVATRTCYNENIEGEVLAFDPQTKMLILKCQSSSGNPKRHDVNIVNL 438
M+A + F++GS V+ RTC + ++GEV+AFD Q+KML LKC SSSG P D+ ++NL
Sbjct: 1 MAAPPGEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINL 60
Query: 437 SLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLFMAI 258
VS+V+I + + P P SLN+ +L ++ R E K A+SA + EGQ+LF I
Sbjct: 61 QYVSEVEIINDRTETPPPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLFQTI 120
Query: 257 ARVIDDVSWAGQSIRVYNNKIHQVMITPPYKVDDVIGEKDSQSYNYIKKFVERHWRD 87
+ I D W ++I V + +V+ITPPY+V++ G K+ + ++++K VE+H+RD
Sbjct: 121 HKTIKDCKWQEKNIVV----MEEVVITPPYQVENCKG-KEGSALSHVRKIVEKHFRD 172
>BC105288-1|AAI05289.1| 131|Homo sapiens LSM12 protein protein.
Length = 131
Score = 100 bits (240), Expect = 4e-21
Identities = 53/129 (41%), Positives = 79/129 (61%), Gaps = 3/129 (2%)
Frame = -3
Query: 617 MSAVVSDCFTIGSIVATRTCYNENIEGEVLAFDPQTKMLIL---KCQSSSGNPKRHDVNI 447
M+A + F++GS V+ RTC + ++GEV+AFD Q+KML L +C SSSG P D+ +
Sbjct: 1 MAAPPGEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALISPECPSSSGKPNHADILL 60
Query: 446 VNLSLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLF 267
+NL VS+V+I + + P P SLN+ +L ++ R E K A+SA + EGQ+LF
Sbjct: 61 INLQYVSEVEIINDRTETPPPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLF 120
Query: 266 MAIARVIDD 240
I + I D
Sbjct: 121 QTIHKTIKD 129
>AL049712-6|CAI22420.2| 906|Homo sapiens transmembrane channel-like
2 protein.
Length = 906
Score = 36.3 bits (80), Expect = 0.11
Identities = 26/87 (29%), Positives = 36/87 (41%)
Frame = -2
Query: 648 LKQKRLSTRKHVGRRFGLLHDRQYSRHAHLLQRKHRRRGPSFRSSNKNVDSEMPIVQRQS 469
+K + S H G R G R S+ A + RRG + S P R+
Sbjct: 16 VKGRVKSGSPHTGDRLGR---RSSSKRALKAEGTPGRRGAQRSQKERAGGSPSPGSPRRK 72
Query: 468 ETARRQHREPVPRQRRSNQEGSIHGTR 388
+T RR+HRE + Q R E + G R
Sbjct: 73 QTGRRRHREELGEQERGEAERTCEGRR 99
>AF417580-1|AAL86401.2| 906|Homo sapiens transmembrane channel-like
protein 2 protein.
Length = 906
Score = 36.3 bits (80), Expect = 0.11
Identities = 26/87 (29%), Positives = 36/87 (41%)
Frame = -2
Query: 648 LKQKRLSTRKHVGRRFGLLHDRQYSRHAHLLQRKHRRRGPSFRSSNKNVDSEMPIVQRQS 469
+K + S H G R G R S+ A + RRG + S P R+
Sbjct: 16 VKGRVKSGSPHTGDRLGR---RSSSKRALKAEGTPGRRGAQRSQKERAGGSPSPGSPRRK 72
Query: 468 ETARRQHREPVPRQRRSNQEGSIHGTR 388
+T RR+HRE + Q R E + G R
Sbjct: 73 QTGRRRHREELGEQERGEAERTCEGRR 99
>BC115376-1|AAI15377.1| 954|Homo sapiens C2orf16 protein protein.
Length = 954
Score = 31.9 bits (69), Expect = 2.3
Identities = 20/60 (33%), Positives = 25/60 (41%)
Frame = -2
Query: 576 SRHAHLLQRKHRRRGPSFRSSNKNVDSEMPIVQRQSETARRQHREPVPRQRRSNQEGSIH 397
S +H + R R PS RS P +R ++R HR P R RS E S H
Sbjct: 652 SERSHCSPSERRHRSPSQRSHRG------PSERRHHSPSKRSHRSPARRSHRSPSERSHH 705
Score = 29.9 bits (64), Expect = 9.2
Identities = 22/59 (37%), Positives = 24/59 (40%)
Frame = -2
Query: 573 RHAHLLQRKHRRRGPSFRSSNKNVDSEMPIVQRQSETARRQHREPVPRQRRSNQEGSIH 397
RH QR H RGPS R + P + ARR HR P R S E S H
Sbjct: 663 RHRSPSQRSH--RGPSERRHHS------PSKRSHRSPARRSHRSPSERSHHSPSERSHH 713
>AL834384-1|CAD39047.1| 845|Homo sapiens hypothetical protein
protein.
Length = 845
Score = 31.9 bits (69), Expect = 2.3
Identities = 20/60 (33%), Positives = 25/60 (41%)
Frame = -2
Query: 576 SRHAHLLQRKHRRRGPSFRSSNKNVDSEMPIVQRQSETARRQHREPVPRQRRSNQEGSIH 397
S +H + R R PS RS P +R ++R HR P R RS E S H
Sbjct: 543 SERSHCSPSERRHRSPSQRSHRG------PSERRHHSPSKRSHRSPARRSHRSPSERSHH 596
Score = 29.9 bits (64), Expect = 9.2
Identities = 22/59 (37%), Positives = 24/59 (40%)
Frame = -2
Query: 573 RHAHLLQRKHRRRGPSFRSSNKNVDSEMPIVQRQSETARRQHREPVPRQRRSNQEGSIH 397
RH QR H RGPS R + P + ARR HR P R S E S H
Sbjct: 554 RHRSPSQRSH--RGPSERRHHS------PSKRSHRSPARRSHRSPSERSHHSPSERSHH 604
>AC074091-7|AAX93198.1| 939|Homo sapiens unknown protein.
Length = 939
Score = 31.9 bits (69), Expect = 2.3
Identities = 20/60 (33%), Positives = 25/60 (41%)
Frame = -2
Query: 576 SRHAHLLQRKHRRRGPSFRSSNKNVDSEMPIVQRQSETARRQHREPVPRQRRSNQEGSIH 397
S +H + R R PS RS P +R ++R HR P R RS E S H
Sbjct: 637 SERSHCSPSERRHRSPSQRSHRG------PSERRHHSPSKRSHRSPARRSHRSPSERSHH 690
Score = 29.9 bits (64), Expect = 9.2
Identities = 22/59 (37%), Positives = 24/59 (40%)
Frame = -2
Query: 573 RHAHLLQRKHRRRGPSFRSSNKNVDSEMPIVQRQSETARRQHREPVPRQRRSNQEGSIH 397
RH QR H RGPS R + P + ARR HR P R S E S H
Sbjct: 648 RHRSPSQRSH--RGPSERRHHS------PSKRSHRSPARRSHRSPSERSHHSPSERSHH 698
>BC025396-1|AAH25396.1| 538|Homo sapiens spermatogenesis associated
18 homolog (rat) protein.
Length = 538
Score = 31.1 bits (67), Expect = 4.0
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = -2
Query: 519 SSNKNVDSEMPIVQRQSETARRQHREPVPRQRRSNQ-EGSIHGTRA 385
S K+VDS++P +Q + R +H++P PR R Q + +++ TR+
Sbjct: 90 SLGKSVDSKVPSLQDTFD--RERHKDPSPRDRDMQQLDSNLNSTRS 133
>AK057468-1|BAB71501.1| 522|Homo sapiens protein ( Homo sapiens
cDNA FLJ32906 fis, clone TESTI2005731. ).
Length = 522
Score = 31.1 bits (67), Expect = 4.0
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = -2
Query: 519 SSNKNVDSEMPIVQRQSETARRQHREPVPRQRRSNQ-EGSIHGTRA 385
S K+VDS++P +Q + R +H++P PR R Q + +++ TR+
Sbjct: 90 SLGKSVDSKVPSLQDTFD--RERHKDPSPRDRDMQQLDSNLNSTRS 133
>BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.
Length = 1022
Score = 30.3 bits (65), Expect = 7.0
Identities = 19/81 (23%), Positives = 36/81 (44%)
Frame = -2
Query: 645 KQKRLSTRKHVGRRFGLLHDRQYSRHAHLLQRKHRRRGPSFRSSNKNVDSEMPIVQRQSE 466
KQK+ +K GRR R+ R ++KHR S + +++ + + +
Sbjct: 186 KQKKKKKKKDRGRRSESSSPRR-ERKKSSKKKKHRSESESKKRKHRSPTPKSKRKSKDKK 244
Query: 465 TARRQHREPVPRQRRSNQEGS 403
R + P P+ RR+++ S
Sbjct: 245 RKRSRSTTPAPKSRRAHRSTS 265
>BC041155-1|AAH41155.1| 311|Homo sapiens SRRM2 protein protein.
Length = 311
Score = 30.3 bits (65), Expect = 7.0
Identities = 19/81 (23%), Positives = 36/81 (44%)
Frame = -2
Query: 645 KQKRLSTRKHVGRRFGLLHDRQYSRHAHLLQRKHRRRGPSFRSSNKNVDSEMPIVQRQSE 466
KQK+ +K GRR R+ R ++KHR S + +++ + + +
Sbjct: 90 KQKKKKKKKDRGRRSESSSPRR-ERKKSSKKKKHRSESESKKRKHRSPTPKSKRKSKDKK 148
Query: 465 TARRQHREPVPRQRRSNQEGS 403
R + P P+ RR+++ S
Sbjct: 149 RKRSRSTTPAPKSRRAHRSTS 169
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein
protein.
Length = 2752
Score = 30.3 bits (65), Expect = 7.0
Identities = 19/81 (23%), Positives = 36/81 (44%)
Frame = -2
Query: 645 KQKRLSTRKHVGRRFGLLHDRQYSRHAHLLQRKHRRRGPSFRSSNKNVDSEMPIVQRQSE 466
KQK+ +K GRR R+ R ++KHR S + +++ + + +
Sbjct: 186 KQKKKKKKKDRGRRSESSSPRR-ERKKSSKKKKHRSESESKKRKHRSPTPKSKRKSKDKK 244
Query: 465 TARRQHREPVPRQRRSNQEGS 403
R + P P+ RR+++ S
Sbjct: 245 RKRSRSTTPAPKSRRAHRSTS 265
>AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein
protein.
Length = 956
Score = 30.3 bits (65), Expect = 7.0
Identities = 19/81 (23%), Positives = 36/81 (44%)
Frame = -2
Query: 645 KQKRLSTRKHVGRRFGLLHDRQYSRHAHLLQRKHRRRGPSFRSSNKNVDSEMPIVQRQSE 466
KQK+ +K GRR R+ R ++KHR S + +++ + + +
Sbjct: 151 KQKKKKKKKDRGRRSESSSPRR-ERKKSSKKKKHRSESESKKRKHRSPTPKSKRKSKDKK 209
Query: 465 TARRQHREPVPRQRRSNQEGS 403
R + P P+ RR+++ S
Sbjct: 210 RKRSRSTTPAPKSRRAHRSTS 230
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 30.3 bits (65), Expect = 7.0
Identities = 19/81 (23%), Positives = 36/81 (44%)
Frame = -2
Query: 645 KQKRLSTRKHVGRRFGLLHDRQYSRHAHLLQRKHRRRGPSFRSSNKNVDSEMPIVQRQSE 466
KQK+ +K GRR R+ R ++KHR S + +++ + + +
Sbjct: 234 KQKKKKKKKDRGRRSESSSPRR-ERKKSSKKKKHRSESESKKRKHRSPTPKSKRKSKDKK 292
Query: 465 TARRQHREPVPRQRRSNQEGS 403
R + P P+ RR+++ S
Sbjct: 293 RKRSRSTTPAPKSRRAHRSTS 313
>BC045671-1|AAH45671.1| 412|Homo sapiens chromosome 2 open reading
frame 53 protein.
Length = 412
Score = 29.9 bits (64), Expect = 9.2
Identities = 21/94 (22%), Positives = 36/94 (38%)
Frame = -2
Query: 663 PYIIQLKQKRLSTRKHVGRRFGLLHDRQYSRHAHLLQRKHRRRGPSFRSSNKNVDSEMPI 484
P ++ Q + S +G FGL + +R HLL K + + + ++P
Sbjct: 278 PQLLPCVQGQESGPLRIGIGFGLRLPQGQARALHLLPEKRPKEAGPQGKATQACGHQLPA 337
Query: 483 VQRQSETARRQHREPVPRQRRSNQEGSIHGTRAP 382
Q + AR P Q RS + + +P
Sbjct: 338 SQPPAAQARADPVPGTPSQTRSFRSAGLQSPNSP 371
>AK127467-1|BAC86992.1| 346|Homo sapiens protein ( Homo sapiens
cDNA FLJ45559 fis, clone BRTHA3003225. ).
Length = 346
Score = 29.9 bits (64), Expect = 9.2
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = -2
Query: 474 QSETARRQHREPVPRQRRSNQEGSIHGTRAPPIIELAQIEHKS*KFY*KQTKIGISI 304
Q + QHR V RRS + S+H R P + Q++ ++ + T +S+
Sbjct: 110 QQQLLEAQHRRLVSHPRRSQERVSVHPHRLHPSFDFGQLQTPQPRYLAEGTDWDLSV 166
>AC013403-7|AAX93171.1| 412|Homo sapiens unknown protein.
Length = 412
Score = 29.9 bits (64), Expect = 9.2
Identities = 21/94 (22%), Positives = 36/94 (38%)
Frame = -2
Query: 663 PYIIQLKQKRLSTRKHVGRRFGLLHDRQYSRHAHLLQRKHRRRGPSFRSSNKNVDSEMPI 484
P ++ Q + S +G FGL + +R HLL K + + + ++P
Sbjct: 278 PQLLPCVQGQESGPLRIGIGFGLRLPQGQARALHLLPEKRPKEAGPQGKATQACGHQLPA 337
Query: 483 VQRQSETARRQHREPVPRQRRSNQEGSIHGTRAP 382
Q + AR P Q RS + + +P
Sbjct: 338 SQPPAAQARADPVPGTPSQTRSFRSAGLQSPNSP 371
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,220,986
Number of Sequences: 237096
Number of extensions: 2408599
Number of successful extensions: 5584
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5555
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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