Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13g06
(804 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 168 9e-43
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 101 2e-22
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc... 99 8e-22
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 36 0.009
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 34 0.021
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|... 29 0.77
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 27 4.1
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 4.1
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 24 4.4
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 26 5.5
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 26 7.2
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 9.5
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 168 bits (408), Expect = 9e-43
Identities = 98/234 (41%), Positives = 135/234 (57%), Gaps = 5/234 (2%)
Frame = -3
Query: 802 RDKVKAFAQLTVSGKRADGRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXRFCLI 623
R+KVK+FA+ TV+ K DG PCP +K++ILDEADSMT AQAAL RFCLI
Sbjct: 101 REKVKSFAKTTVTNK-VDGYPCPPFKIIILDEADSMTQDAQAALRRTMESYARITRFCLI 159
Query: 622 CNYVSRIIPPITSRCSKFRFKPLARENVIKRLREICEAENVDVGEGEILNQAVDTCEGDL 443
CNY++RII P++SRCSK+RFKPL EN++KRL I + V + G ++N V+ GD+
Sbjct: 160 CNYMTRIIDPLSSRCSKYRFKPLDNENMVKRLEFIAADQAVSMEPG-VVNALVECSGGDM 218
Query: 442 RRALTALQCCQRLY--GRITADGLIEVTGLVPEKLVNEYLS---IKNYSELEEFVQNFLM 278
R+A+T LQ L+ IT + E+ G VP ++ L KN S +E ++
Sbjct: 219 RKAITFLQSAANLHQGTPITISSVEELAGAVPYNIIRSLLDTAYTKNVSNIETLSRDVAA 278
Query: 277 RAYSASQLLEQLSATVVAAGHLTNKQKCAISEKTAVCLHRLLDGGSEFMQLTDL 116
YS +L QL ++ L++ K I K + RL DG E +QL DL
Sbjct: 279 EGYSTGIILSQLHDVLLKEETLSSPVKYKIFMKLSEVDKRLNDGADETLQLLDL 332
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 101 bits (241), Expect = 2e-22
Identities = 65/207 (31%), Positives = 106/207 (51%), Gaps = 3/207 (1%)
Frame = -3
Query: 733 SYKLVILDEADSMTTAAQAALXXXXXXXXXXXRFCLICNYVSRIIPPITSRCSKFRFKPL 554
++K++ILDEAD+MT AAQ AL RFC+ICNY+++I P I SRC++FRF+PL
Sbjct: 120 TFKMIILDEADAMTLAAQNALRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPL 179
Query: 553 ARENVIKRLREICEAENVDVGEGEILNQAVDTCEGDLRRALTALQCCQRLYGRITADGLI 374
+ + K + + ++E+ ++ + + + +GD+R+AL LQ C Y I +
Sbjct: 180 PPKEIEKTVDHVIQSEHCNI-DPDAKMAVLRLSKGDMRKALNILQACHAAYDHIDVSAIY 238
Query: 373 EVTGLVPEKLVNEYL-SIKNYSELEEFVQNFLMRAYSASQLLEQLSATVVAAGHLTNK-- 203
G ++ +L SI N + F ++ L + L+ A L K
Sbjct: 239 NCVGHPHPSDIDYFLKSIMNDEFVIAFNTISSIKQQKGLALQDILTCIFEALDELEIKPN 298
Query: 202 QKCAISEKTAVCLHRLLDGGSEFMQLT 122
K I ++ A HR+ G SE +QL+
Sbjct: 299 AKIFILDQLATIEHRMSFGCSEKIQLS 325
>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 98.7 bits (235), Expect = 8e-22
Identities = 70/248 (28%), Positives = 117/248 (47%), Gaps = 3/248 (1%)
Frame = -3
Query: 802 RDKVKAFAQLTVSGKRADGRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXRFCLI 623
R+++KAFAQ V P +K++ILDEADSMT AQ AL RF L
Sbjct: 102 RNRIKAFAQKKVI------LPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALA 155
Query: 622 CNYVSRIIPPITSRCSKFRFKPLARENVIKRLREICEAENVDVGEGEILNQAVDTCEGDL 443
CN ++II PI SRC+ R+ L + V++RL IC+AE V+ + + L + T EGD+
Sbjct: 156 CNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLNICKAEKVNYTD-DGLAALIMTAEGDM 214
Query: 442 RRALTALQCCQRLYGRITADGLIEVTGLVPEKLVNEYLSIKNYSELE---EFVQNFLMRA 272
R+A+ LQ +G + + + V ++ L+ ++ E +Q
Sbjct: 215 RQAVNNLQSTVAGFGLVNGENVFRVADQPSPVAIHAMLTACQSGNIDVALEKLQGIWDLG 274
Query: 271 YSASQLLEQLSATVVAAGHLTNKQKCAISEKTAVCLHRLLDGGSEFMQLTDLGCTLIMAN 92
+SA ++ + V + + + ++ +L+G +QL+ L C L +
Sbjct: 275 FSAVDIVTNMFRVVKTMDSIPEFSRLEMLKEIGQTHMIILEGVQTLLQLSGLVCRLAKSQ 334
Query: 91 NNP*CYLI 68
P ++I
Sbjct: 335 MKPESFII 342
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 35.5 bits (78), Expect = 0.009
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Frame = -3
Query: 607 RIIPPITSRCSKFRFKPLARENVIKRLREICEAENVDVG------EGEILNQAVDTCEGD 446
R+ + SRC F K L R+NV K L C E+ +G E I++ +GD
Sbjct: 219 RLNSALISRCPVFVLKKLTRDNVKKILNHACLLESERLGSSMPNVETSIIDYISAITDGD 278
Query: 445 LRRALTALQ 419
R AL AL+
Sbjct: 279 ARMALNALE 287
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 34.3 bits (75), Expect = 0.021
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = -3
Query: 625 ICNYV-SRIIPPITSRCSKFRFKPLARENVIKRLREICEAENVDVGEGEILNQAVDTCEG 449
ICN + + + P+ F+P + +++ RLR IC EN+ V + L D
Sbjct: 530 ICNDLYTPALRPLRPYAQIIYFRPPPQASLVGRLRTICRNENIAV-DSRSLTLLTDIYNS 588
Query: 448 DLRRALTALQ 419
D+R + +LQ
Sbjct: 589 DIRSCINSLQ 598
>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
3|||Manual
Length = 700
Score = 29.1 bits (62), Expect = 0.77
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = -1
Query: 612 CQGSYRQSRVAVQNFALSH*LERMLLNGYVRYVKPKMWMSVKVRF*TKQW 463
CQ + V + A+ H + LNG + ++PK+W+ F +W
Sbjct: 79 CQDILLDIGMPVMHKAMRHNCRILALNGKILLIRPKIWLCDDGNFRESRW 128
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = -3
Query: 562 KPLARENVIKRLREICEAENVDVGEGEILNQAVDTCEGDLRRALTALQCCQRLYGRITAD 383
KPL ++ ++ +R CE +D EG + N + + A A+ Q L+G A
Sbjct: 236 KPLLQKIILSSIRTKCEVVTLDEHEGGLRN--LLNFGHSIGHAYEAILYPQILHGECVAI 293
Query: 382 GLIE 371
G+++
Sbjct: 294 GMVK 297
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.6 bits (56), Expect = 4.1
Identities = 24/72 (33%), Positives = 33/72 (45%)
Frame = +3
Query: 300 SSNSE*FLMLRYSLTNFSGTSPVTSISPSAVILPYNLWQHCSAVSALRRSPSQVSTAWFR 479
SSNS L S T + T T + + PY + + S + S S S + F
Sbjct: 476 SSNSSYTTTLTASNTTVTFTGTGTGSATATSSSPY--YSNSSIIVPTTVSTSG-SVSSFS 532
Query: 480 ISPSPTSTFSAS 515
SPSPTS+FS +
Sbjct: 533 SSPSPTSSFSGT 544
>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 314
Score = 23.8 bits (49), Expect(2) = 4.4
Identities = 10/22 (45%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Frame = +3
Query: 516 HISRNR-LITFSLANGLKRNFE 578
H+ RN ++ FSL +G+K++FE
Sbjct: 77 HLRRNADVVGFSLPHGVKQSFE 98
Score = 21.0 bits (42), Expect(2) = 4.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 483 SPSPTSTFSASHISRNRL 536
S S +ST ++SH S+N L
Sbjct: 31 STSHSSTATSSHYSKNNL 48
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 262 MPNTLASGNSEQIPPILNSS 321
+PN L S IPPILNSS
Sbjct: 143 LPNHLTKTKSCSIPPILNSS 162
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +1
Query: 175 PSSHLWRISVYSLDVQPPQPWHSTVPEAAMPNTLASGNSEQIPPILN 315
P HL ++ L P Q W + V +AA N G+ + + + N
Sbjct: 646 PQKHLQERLIFDLMALPNQAWENIVAQAAQ-NAQVLGDPQTVKILAN 691
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -3
Query: 415 CQRLYGRITADGLIEVTGLVPEKLVNEYLSIKNYSELE 302
CQ Y ++ +E+ EK++NEYL ++ L+
Sbjct: 2352 CQVTYSKVDIPWSMELHAASVEKVLNEYLELQRRDLLQ 2389
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,174,632
Number of Sequences: 5004
Number of extensions: 63851
Number of successful extensions: 178
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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