Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13g06
(804 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0489 + 3872495-3872538,3872663-3872741,3872835-3872914,387... 171 7e-43
04_04_0840 + 28570642-28570809,28570919-28571025,28571137-285712... 85 8e-17
02_05_0922 - 32742863-32742958,32743081-32743136,32743253-327433... 84 1e-16
12_01_0671 - 5702051-5702159,5702493-5703216,5703910-5704476,570... 58 6e-09
11_02_0042 - 7672565-7672729,7672902-7672977,7673409-7674132,767... 52 7e-07
03_06_0267 - 32751431-32751489,32751600-32751645,32751886-327519... 46 4e-05
08_01_0139 + 1105857-1107008,1107124-1107328,1107583-1107768,110... 41 0.001
12_01_1073 + 11135853-11137388,11137627-11137846,11137990-111381... 40 0.002
03_02_0326 + 7474352-7474448,7474913-7474977,7475105-7475191,747... 33 0.27
05_06_0150 - 25994562-25995980 33 0.35
03_06_0110 - 31727376-31727381,31727554-31727664,31728071-317281... 31 1.4
03_06_0625 - 35166736-35168166 30 2.5
12_02_0154 + 14494319-14495857 29 3.3
04_03_0623 - 18109311-18109853,18109900-18110495,18111292-181114... 29 4.3
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 28 7.6
07_03_1744 + 29171372-29171438,29172789-29173768 28 10.0
06_03_1512 - 30688098-30688133,30688401-30688537,30688744-306888... 28 10.0
05_06_0149 - 25991761-25993181,25993246-25993324 28 10.0
05_01_0319 + 2503963-2504176,2504316-2504376,2504691-2504769,250... 28 10.0
>12_01_0489 +
3872495-3872538,3872663-3872741,3872835-3872914,
3873888-3874007,3874090-3874159,3874238-3874311,
3874393-3874513,3874600-3874662,3874748-3874807,
3875156-3875281,3875358-3875441,3875912-3876010
Length = 339
Score = 171 bits (415), Expect = 7e-43
Identities = 97/240 (40%), Positives = 132/240 (55%), Gaps = 4/240 (1%)
Frame = -3
Query: 802 RDKVKAFAQLTVSGKRADGRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXRFCLI 623
R K+K FA + V R G PCP YK++ILDEADSMT AQ AL RF I
Sbjct: 91 RTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFI 150
Query: 622 CNYVSRIIPPITSRCSKFRFKPLARENVIKRLREICEAENVDVGEGEILNQAVDTCEGDL 443
CNY+SRII P+ SRC+KFRFKPL+ E + R+ IC E + + + + L GDL
Sbjct: 151 CNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGLSL-DAQALATLSTISNGDL 209
Query: 442 RRALTALQCCQRLYG-RITADGLIEVTGLVPEKLVNEYLSIKNYSELE---EFVQNFLMR 275
RRA+T LQ RL+G I++ LI V+G +PE +V L+ E + + V N +
Sbjct: 210 RRAITYLQSAARLFGSSISSTDLISVSGAIPEDVVKSLLASCKSGEFDVANKEVNNIIAD 269
Query: 274 AYSASQLLEQLSATVVAAGHLTNKQKCAISEKTAVCLHRLLDGGSEFMQLTDLGCTLIMA 95
Y SQL+ Q +V A + ++QK I +K L+DG E++QL D+ I A
Sbjct: 270 GYPVSQLISQFLDVIVNADDIPDEQKARICKKLGEADKCLVDGADEYLQLLDVASETIRA 329
>04_04_0840 +
28570642-28570809,28570919-28571025,28571137-28571238,
28571786-28571981,28572691-28572819,28572869-28572895,
28572896-28573090,28573182-28573292
Length = 344
Score = 84.6 bits (200), Expect = 8e-17
Identities = 75/242 (30%), Positives = 117/242 (48%), Gaps = 13/242 (5%)
Frame = -3
Query: 802 RDKVKAFAQLTVSGKRADGRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXRFCLI 623
R+K+K FAQ V+ + GR +K+VILDEADSMT+ AQ AL RF L
Sbjct: 98 RNKIKMFAQKKVTLQ--PGR----HKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALA 151
Query: 622 CNYVSRIIPPITSRCSKFRFKPLARENVIKRLREICEAENVD-VGEGEILNQAVDTCEGD 446
CN S+II PI SRC+ RF L+ + ++ RL + AE V V EG L + T +GD
Sbjct: 152 CNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVAAEKVPYVPEG--LEAIIFTADGD 209
Query: 445 LRRALTALQCCQRLYGRITADGLIEVTGLVPEKLVNEY---LSIKN---------YSELE 302
+R+AL LQ + + + + ++ ++ V + L +KN + E
Sbjct: 210 MRQALNNLQATVSGFRFVNQENVFKLIVMLYWLQVCDQPHPLHVKNMVKNVLDGKFDEAC 269
Query: 301 EFVQNFLMRAYSASQLLEQLSATVVAAGHLTNKQKCAISEKTAVCLHRLLDGGSEFMQLT 122
++ YS + ++ L V+ + K + ++T R+ DG F+QL+
Sbjct: 270 SALKQLYDLGYSPTDIITTL-FRVIKNYDMAEYLKLELLKETGFAHMRICDGVGSFLQLS 328
Query: 121 DL 116
L
Sbjct: 329 GL 330
>02_05_0922 -
32742863-32742958,32743081-32743136,32743253-32743382,
32743768-32743849,32744038-32744227,32744290-32744369,
32744769-32744985,32745740-32745923
Length = 344
Score = 83.8 bits (198), Expect = 1e-16
Identities = 52/134 (38%), Positives = 73/134 (54%), Gaps = 10/134 (7%)
Frame = -3
Query: 733 SYKLVILDEADSMTTAAQAALXXXXXXXXXXXR----------FCLICNYVSRIIPPITS 584
S K+V+LDEAD+MT AQ AL F LICN+V++IIP + S
Sbjct: 138 SVKMVLLDEADAMTKDAQFALRRATSSNLPHLTVIEKHTRSTRFALICNHVNKIIPALQS 197
Query: 583 RCSKFRFKPLARENVIKRLREICEAENVDVGEGEILNQAVDTCEGDLRRALTALQCCQRL 404
RC++FRF PL +V +RL+ I ++E +DV +G L V GD+R+AL LQ
Sbjct: 198 RCTRFRFAPLDGTHVRERLKHIIQSEGLDVDDGG-LTALVRLSNGDMRKALNILQSTHMA 256
Query: 403 YGRITADGLIEVTG 362
+IT + + TG
Sbjct: 257 SKQITEEAVYLCTG 270
>12_01_0671 - 5702051-5702159,5702493-5703216,5703910-5704476,
5704654-5704873,5705303-5707207
Length = 1174
Score = 58.4 bits (135), Expect = 6e-09
Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 3/204 (1%)
Frame = -3
Query: 730 YKLVILDEADSMTTAAQAALXXXXXXXXXXXRFCLICNYVSRIIPPITSRCSKFRFKPLA 551
YKL ++DE +++ +A F I + + SRC K+ F +
Sbjct: 516 YKLFVVDECHMVSSKLWSAFMKFLDEPLPRVVFVFITIDPDNLPRAVISRCQKYVFSKIK 575
Query: 550 RENVIKRLREICEAENVDVGEGEILNQAVDTCEGDLRRALTALQCCQRLYGRITADGLIE 371
+++ RLR IC EN+DV E L+ +G LR A T L L +IT + +
Sbjct: 576 DIDIVCRLRRICVKENLDV-ELAALDLIALNSDGSLRDAETMLDQLSLLGKKITPSLVND 634
Query: 370 VTGLVPEKLVNEYLSIKNYSELEEFV---QNFLMRAYSASQLLEQLSATVVAAGHLTNKQ 200
+ G+V E+ + + L I S+ E V + + L+ QL+ ++ T K
Sbjct: 635 LVGVVSEEKLLDLLEIAMSSDTAETVKRSRELMDSGIDPMALMSQLAGLIMDIIAGTYKL 694
Query: 199 KCAISEKTAVCLHRLLDGGSEFMQ 128
+ + AV L DG E +Q
Sbjct: 695 ADSTANDMAVGGRSLTDGELERLQ 718
>11_02_0042 -
7672565-7672729,7672902-7672977,7673409-7674132,
7674684-7674708,7675041-7675486,7676643-7676862,
7677609-7678459,7678697-7679555
Length = 1121
Score = 51.6 bits (118), Expect = 7e-07
Identities = 38/147 (25%), Positives = 67/147 (45%)
Frame = -3
Query: 730 YKLVILDEADSMTTAAQAALXXXXXXXXXXXRFCLICNYVSRIIPPITSRCSKFRFKPLA 551
YK+ ++DE +++ +A F I + + SRC K+ F +
Sbjct: 451 YKVFVVDECHMVSSKVWSAFMKFLDEPLPRVVFIFITIDPENLPRAVISRCQKYMFSKIK 510
Query: 550 RENVIKRLREICEAENVDVGEGEILNQAVDTCEGDLRRALTALQCCQRLYGRITADGLIE 371
+++ RLR+I EN+DV E L+ +G LR A T L L +IT + +
Sbjct: 511 DIDIVCRLRKIAVKENLDV-ELAALDLIALNSDGSLRDAETMLDQLSLLGKKITPSLVND 569
Query: 370 VTGLVPEKLVNEYLSIKNYSELEEFVQ 290
+ G+V E+ + + L I ++ E V+
Sbjct: 570 LVGVVSEEKLLDLLEIAMSADTAETVK 596
>03_06_0267 -
32751431-32751489,32751600-32751645,32751886-32751960,
32752045-32752114,32752288-32752386,32752505-32752641,
32753040-32753221,32753314-32753482,32753824-32753856,
32753958-32754068,32754184-32754295,32755592-32755727,
32756264-32756291
Length = 418
Score = 46.0 bits (104), Expect = 4e-05
Identities = 28/114 (24%), Positives = 54/114 (47%)
Frame = -3
Query: 751 DGRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXRFCLICNYVSRIIPPITSRCSK 572
D + ++K+++L+E D ++ AQ +L R L CN S++ + SRC
Sbjct: 188 DAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSRCLN 247
Query: 571 FRFKPLARENVIKRLREICEAENVDVGEGEILNQAVDTCEGDLRRALTALQCCQ 410
R + + +++ L I + EN+ + G A + +LRRA+ + C+
Sbjct: 248 VRVNAPSEDQIVQVLEFIGKKENLQLPFGFAARIAAQS-NRNLRRAILFFETCK 300
>08_01_0139 +
1105857-1107008,1107124-1107328,1107583-1107768,
1107924-1108133,1108552-1109186
Length = 795
Score = 40.7 bits (91), Expect = 0.001
Identities = 40/198 (20%), Positives = 79/198 (39%), Gaps = 6/198 (3%)
Frame = -3
Query: 730 YKLVILDEADSMTTAAQAALXXXXXXXXXXXRFCLICNYVSRIIPPITSRCSKFRFKPLA 551
+K++I+D+ M ++ F +I + + ++ C +RF +
Sbjct: 265 FKVLIVDDCQHMDKEGWYSVYSSLEGIPDSSIFVMITSDIDKLPSNSVGWCQSYRFCKVD 324
Query: 550 RENVIKRLREICEAENVDVGEGEILNQAVDTCEGDLRRALTALQCCQRLYGRITADGLIE 371
+ RL IC E ++ E E L G +R A+ L L RI+ +
Sbjct: 325 EAEIALRLSRICINEGMEF-EAEALELIARKANGSIRDAVQMLDQLTLLGKRISKSVTYD 383
Query: 370 VTGLVPEKLVNEYLSIKNYSELEEFV---QNFLMRAYSASQLLEQLS---ATVVAAGHLT 209
+ G V ++ + + L++ S+ V + L QLL QL+ ++A H +
Sbjct: 384 LIGDVSDEELLDLLNLAFSSDAATIVRRARELLSSKVDPLQLLAQLANLIMDILAGRHQS 443
Query: 208 NKQKCAISEKTAVCLHRL 155
+ Q+ + +H+L
Sbjct: 444 DSQEVRKVTAAEIDVHKL 461
>12_01_1073 +
11135853-11137388,11137627-11137846,11137990-11138178,
11138257-11138457,11138547-11139246,11163479-11164106
Length = 1157
Score = 40.3 bits (90), Expect = 0.002
Identities = 41/194 (21%), Positives = 81/194 (41%), Gaps = 3/194 (1%)
Frame = -3
Query: 730 YKLVILDEADSMTTAAQAALXXXXXXXXXXXRFCLICNYVSRIIPPITSRCSKFRFKPLA 551
+K+ I+DE + A +A+ + +I + + + + C KF F +
Sbjct: 393 FKVFIVDECHLLPEDAWSAILKSLDEPYRHAVYIMITSDIDSLPRTSITHCQKFHFPKIK 452
Query: 550 RENVIKRLREICEAENVDVGEGEILNQAVDTCEGDLRRALTALQCCQRLYGRITADGLIE 371
+++ RL IC E ++ + + + G LR A L L +IT + E
Sbjct: 453 VADIVYRLERICIEEGLEFDHDGLYFISAKS-NGSLRDAEIMLDQLSLLGKKITISLVHE 511
Query: 370 VTGLVPEKLVNEYLSIKNYSELEEFV---QNFLMRAYSASQLLEQLSATVVAAGHLTNKQ 200
+ G V + + E L + S+ V + + A QL+ QL+ ++ L+ +
Sbjct: 512 LVGSVSDDELIELLDLALSSDTTNTVRRARELMASAIDPLQLVSQLANLIMDI--LSGRC 569
Query: 199 KCAISEKTAVCLHR 158
+ A++E + L R
Sbjct: 570 QSAVTEVSKSFLGR 583
>03_02_0326 +
7474352-7474448,7474913-7474977,7475105-7475191,
7475393-7475440,7476086-7476142,7476588-7476687,
7476875-7477185,7477298-7477667,7478745-7478876,
7479362-7479575,7479650-7479710,7480098-7480292
Length = 578
Score = 33.1 bits (72), Expect = 0.27
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = -3
Query: 574 KFRFKPLARENVIKRLREICEAENVDVGEGEILNQAVDTCEGDLRRALTALQ 419
K F P+ ++ K L IC+ E D+ + ++++Q + GD+R A+ +LQ
Sbjct: 255 KISFNPVTVNSIKKILVRICKQEGSDLTD-DLVHQIATSSGGDIRHAIMSLQ 305
>05_06_0150 - 25994562-25995980
Length = 472
Score = 32.7 bits (71), Expect = 0.35
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +3
Query: 387 AVILPYNLWQHCSAVSALRRSPSQVSTAWFRISPSPTSTFSASHISRNRLITFSLANGLK 566
AVI P N + A+ R + + FRI P+P S +H + L T LAN +
Sbjct: 37 AVIDPPN--NDAMSADAMARLAAGNPSVTFRILPAPASPDPGAHHVKRNLDTLRLANPVL 94
Query: 567 RNFEQRL-VIGGMILD 611
R F + L + ++LD
Sbjct: 95 REFLRSLPAVDALLLD 110
>03_06_0110 -
31727376-31727381,31727554-31727664,31728071-31728133,
31729202-31729331,31729532-31729701,31729800-31729859,
31729941-31730018,31730108-31730197,31730275-31731118,
31731220-31731281,31731362-31731423,31731511-31731700
Length = 621
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 114 PKSVSCMNSDPPSSRRCRQTAVFSLMA 194
P C +S+P SS++C QTAV S+ A
Sbjct: 247 PSRYLCQSSNPKSSKKCDQTAVKSVKA 273
>03_06_0625 - 35166736-35168166
Length = 476
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 474 FRISPSPTSTFSASHISRNRLITFSLANGLKRNFEQRL 587
FR+ P+P S +A+H +R L LAN + R F + L
Sbjct: 64 FRLLPAPPSPDAAAHPARRALDALRLANPVLREFLRSL 101
>12_02_0154 + 14494319-14495857
Length = 512
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -3
Query: 568 RFKPLARENVIK-RLREICEAENVDVGEGEILNQAVDTCEGDLRRALTALQCCQRLYGRI 392
+F P R V +R I ++ V E + + +++ + GDL+ + LQ CQ ++ +
Sbjct: 107 KFNPAKRVRVAAFTVRNILSRHDIGVDEIDRVVESLQSMCGDLKEFMMLLQACQPIHRPL 166
Query: 391 TADGLIE 371
+ IE
Sbjct: 167 ATNIFIE 173
>04_03_0623 -
18109311-18109853,18109900-18110495,18111292-18111493,
18111616-18111814,18112091-18112191
Length = 546
Score = 29.1 bits (62), Expect = 4.3
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Frame = +2
Query: 230 NRGTQLFQKLRCRIRSHQEILNKFLQF*IVLDA*VLINQFFRNKSSHLN*SISSDPAVQP 409
N T+ Q+L R + E + K + + + VL+ +F NK+ H +DP+++
Sbjct: 278 NSRTEFTQELLILSRVNHENIVKLIGCCLQFEVPVLVYEFVPNKTLHYLIHSQNDPSIRT 337
Query: 410 L-ATL*CC*RSAQITFTSIHCLV*NLTFTDIHIFG 511
L L SA+ F+ +H L + DI FG
Sbjct: 338 LEIRLKVAAESAE-AFSYLHSLDHPILHGDISDFG 371
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 28.3 bits (60), Expect = 7.6
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 396 LPYNLWQHCSAVSALRRSPSQVSTAWFRISPSPTSTF-SASHISR-NRLITFSL 551
L + W A + LRRSPS+ S +SPSP ++ + H+ + N +T L
Sbjct: 299 LEVDSWGRDHADNRLRRSPSRSSNFHHPLSPSPDNSLENLQHMQKENEFLTARL 352
>07_03_1744 + 29171372-29171438,29172789-29173768
Length = 348
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -3
Query: 802 RDKVKAFAQLTVSGKRA--DGRPCPSYKLVILDEAD 701
R K+ + ++ RA D PCP Y+ V+LD D
Sbjct: 142 RGKLVSLLKMPTDSDRAYYDFSPCPEYRFVVLDAYD 177
>06_03_1512 -
30688098-30688133,30688401-30688537,30688744-30688834,
30689265-30690815
Length = 604
Score = 27.9 bits (59), Expect = 10.0
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -3
Query: 586 SRCSKFRFKPLARENVIKRLREIC-EAENVDVGEGEILNQAVDTCEGDLR 440
SR K + L+REN+ L ++C E E++ V G A+ GD++
Sbjct: 447 SRSRKLDRRILSRENISSALVDVCEECESLLVEAGRSYRMALSIDSGDVK 496
>05_06_0149 - 25991761-25993181,25993246-25993324
Length = 499
Score = 27.9 bits (59), Expect = 10.0
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +3
Query: 387 AVILPYNLWQHCSAVSALRRSPSQVSTAWFRISPSPTSTFSASHISRNRLITFSLANGLK 566
AVI P N + A+ R + + FR+ P+P S +H + T LAN +
Sbjct: 64 AVIDPPN--NDAVSADAMARLAAANPSITFRLLPAPDSPDVGAHPIKRSHDTLKLANPVL 121
Query: 567 RNFEQRL-VIGGMILD 611
R F + L + ++LD
Sbjct: 122 REFLRSLPAVDALLLD 137
>05_01_0319 +
2503963-2504176,2504316-2504376,2504691-2504769,
2504861-2504940,2505046-2505140,2505748-2505847,
2506647-2506716,2507657-2507758,2507972-2508053,
2508257-2508304,2508841-2509009,2509089-2509314,
2509961-2510131,2510200-2510438,2510600-2510684,
2510778-2510876,2510954-2511153,2511232-2511307,
2511463-2511675,2511763-2511815,2511999-2512151,
2512474-2512606
Length = 915
Score = 27.9 bits (59), Expect = 10.0
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 321 LMLRYSLTNFSGTSPVTSISPSAVILPYNLWQHCSAVSALRRSPSQV 461
L+ +S TN+ G SP+TS A + P L + C L+ P V
Sbjct: 767 LITLFSATNYCGMSPLTSFVTYASMQPSFLLRPCVHQLILQSLPQNV 813
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,770,278
Number of Sequences: 37544
Number of extensions: 424270
Number of successful extensions: 1239
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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