Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13g06
(804 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M87339-1|AAB09785.1| 363|Homo sapiens replication factor C, 37-... 199 1e-50
CR536561-1|CAG38798.1| 363|Homo sapiens RFC4 protein. 199 1e-50
BT006987-1|AAP35633.1| 363|Homo sapiens replication factor C (a... 199 1e-50
BC024022-1|AAH24022.1| 363|Homo sapiens replication factor C (a... 199 1e-50
BC017452-1|AAH17452.1| 363|Homo sapiens replication factor C (a... 199 1e-50
AF538718-1|AAM97933.1| 363|Homo sapiens replication factor C (a... 199 1e-50
L07540-1|AAB09784.1| 340|Homo sapiens replication factor C, 36-... 109 1e-23
CR407651-1|CAG28579.1| 340|Homo sapiens RFC5 protein. 109 1e-23
BC013961-1|AAH13961.1| 340|Homo sapiens replication factor C (a... 109 1e-23
BC001866-1|AAH01866.1| 340|Homo sapiens replication factor C (a... 109 1e-23
AY254323-1|AAO63493.1| 340|Homo sapiens replication factor C (a... 109 1e-23
AB208992-1|BAD92229.1| 351|Homo sapiens replication factor C 5 ... 109 1e-23
M87338-1|AAB09786.1| 354|Homo sapiens replication factor C, 40-... 85 3e-16
AF045555-4|AAC04860.1| 354|Homo sapiens replication factor C su... 85 3e-16
AC005081-1|AAP22334.1| 354|Homo sapiens unknown protein. 85 3e-16
BT007058-1|AAP35707.1| 320|Homo sapiens replication factor C (a... 66 2e-10
BC002813-1|AAH02813.1| 320|Homo sapiens replication factor C (a... 66 2e-10
AF483622-1|AAL82503.1| 320|Homo sapiens replication factor C (a... 66 2e-10
AC005081-2|AAP22335.1| 320|Homo sapiens unknown protein. 66 2e-10
L07541-1|AAB07268.1| 356|Homo sapiens replication factor C, 38-... 60 9e-09
BT019668-1|AAV38474.1| 356|Homo sapiens replication factor C (a... 60 9e-09
BC000149-1|AAH00149.1| 356|Homo sapiens replication factor C (a... 60 9e-09
AL139081-1|CAH70947.1| 356|Homo sapiens replication factor C (a... 60 9e-09
AF484446-1|AAL82505.1| 356|Homo sapiens replication factor C (a... 60 9e-09
AK222572-1|BAD96292.1| 356|Homo sapiens replication factor C 3 ... 60 1e-08
BC057389-1|AAH57389.1| 213|Homo sapiens HS1BP3 protein protein. 31 3.7
BC050636-1|AAH50636.1| 392|Homo sapiens HCLS1 binding protein 3... 31 3.7
BC027947-1|AAH27947.1| 213|Homo sapiens HS1BP3 protein protein. 31 3.7
AK024311-1|BAB14878.1| 302|Homo sapiens protein ( Homo sapiens ... 31 3.7
AC012065-1|AAX93235.1| 392|Homo sapiens unknown protein. 31 3.7
M62424-1|AAA36743.1| 425|Homo sapiens thrombin receptor protein. 30 8.5
BT007279-1|AAP35943.1| 425|Homo sapiens coagulation factor II (... 30 8.5
BC051909-1|AAH51909.1| 425|Homo sapiens coagulation factor II (... 30 8.5
BC002464-1|AAH02464.1| 425|Homo sapiens coagulation factor II (... 30 8.5
AF391809-1|AAK69768.1| 425|Homo sapiens coagulation factor II (... 30 8.5
>M87339-1|AAB09785.1| 363|Homo sapiens replication factor C, 37-kDa
subunit protein.
Length = 363
Score = 199 bits (485), Expect = 1e-50
Identities = 115/247 (46%), Positives = 158/247 (63%), Gaps = 5/247 (2%)
Frame = -3
Query: 802 RDKVKAFAQLTVSGKRADGRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXRFCLI 623
R+KVK FAQLTVSG R+DG+PCP +K+VILDEADSMT+AAQAAL RFCLI
Sbjct: 120 REKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLI 179
Query: 622 CNYVSRIIPPITSRCSKFRFKPLARENVIKRLREICEAENVDVGEGEILNQAVDTCEGDL 443
CNYVSRII P+TSRCSKFRFKPL+ + +RL +I + ENV + + E + V EGDL
Sbjct: 180 CNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISD-EGIAYLVKVSEGDL 238
Query: 442 RRALTALQCCQRLYG--RITADGLIEVTGLVP-EKLVNEYLSIK--NYSELEEFVQNFLM 278
R+A+T LQ RL G IT + ++ G++P EK+ + + + ++ +LE V++ +
Sbjct: 239 RKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLID 298
Query: 277 RAYSASQLLEQLSATVVAAGHLTNKQKCAISEKTAVCLHRLLDGGSEFMQLTDLGCTLIM 98
++A+QL+ QL VV +L++KQK I+EK A L DG E +QL L C +M
Sbjct: 299 EGHAATQLVNQLH-DVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISL-CATVM 356
Query: 97 ANNNP*C 77
+ C
Sbjct: 357 QQLSQNC 363
>CR536561-1|CAG38798.1| 363|Homo sapiens RFC4 protein.
Length = 363
Score = 199 bits (485), Expect = 1e-50
Identities = 115/247 (46%), Positives = 158/247 (63%), Gaps = 5/247 (2%)
Frame = -3
Query: 802 RDKVKAFAQLTVSGKRADGRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXRFCLI 623
R+KVK FAQLTVSG R+DG+PCP +K+VILDEADSMT+AAQAAL RFCLI
Sbjct: 120 REKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLI 179
Query: 622 CNYVSRIIPPITSRCSKFRFKPLARENVIKRLREICEAENVDVGEGEILNQAVDTCEGDL 443
CNYVSRII P+TSRCSKFRFKPL+ + +RL +I + ENV + + E + V EGDL
Sbjct: 180 CNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISD-EGIAYLVKVSEGDL 238
Query: 442 RRALTALQCCQRLYG--RITADGLIEVTGLVP-EKLVNEYLSIK--NYSELEEFVQNFLM 278
R+A+T LQ RL G IT + ++ G++P EK+ + + + ++ +LE V++ +
Sbjct: 239 RKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLID 298
Query: 277 RAYSASQLLEQLSATVVAAGHLTNKQKCAISEKTAVCLHRLLDGGSEFMQLTDLGCTLIM 98
++A+QL+ QL VV +L++KQK I+EK A L DG E +QL L C +M
Sbjct: 299 EGHAATQLVNQLH-DVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISL-CATVM 356
Query: 97 ANNNP*C 77
+ C
Sbjct: 357 QQLSQNC 363
>BT006987-1|AAP35633.1| 363|Homo sapiens replication factor C
(activator 1) 4, 37kDa protein.
Length = 363
Score = 199 bits (485), Expect = 1e-50
Identities = 115/247 (46%), Positives = 158/247 (63%), Gaps = 5/247 (2%)
Frame = -3
Query: 802 RDKVKAFAQLTVSGKRADGRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXRFCLI 623
R+KVK FAQLTVSG R+DG+PCP +K+VILDEADSMT+AAQAAL RFCLI
Sbjct: 120 REKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLI 179
Query: 622 CNYVSRIIPPITSRCSKFRFKPLARENVIKRLREICEAENVDVGEGEILNQAVDTCEGDL 443
CNYVSRII P+TSRCSKFRFKPL+ + +RL +I + ENV + + E + V EGDL
Sbjct: 180 CNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISD-EGIAYLVKVSEGDL 238
Query: 442 RRALTALQCCQRLYG--RITADGLIEVTGLVP-EKLVNEYLSIK--NYSELEEFVQNFLM 278
R+A+T LQ RL G IT + ++ G++P EK+ + + + ++ +LE V++ +
Sbjct: 239 RKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLID 298
Query: 277 RAYSASQLLEQLSATVVAAGHLTNKQKCAISEKTAVCLHRLLDGGSEFMQLTDLGCTLIM 98
++A+QL+ QL VV +L++KQK I+EK A L DG E +QL L C +M
Sbjct: 299 EGHAATQLVNQLH-DVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISL-CATVM 356
Query: 97 ANNNP*C 77
+ C
Sbjct: 357 QQLSQNC 363
>BC024022-1|AAH24022.1| 363|Homo sapiens replication factor C
(activator 1) 4, 37kDa protein.
Length = 363
Score = 199 bits (485), Expect = 1e-50
Identities = 115/247 (46%), Positives = 158/247 (63%), Gaps = 5/247 (2%)
Frame = -3
Query: 802 RDKVKAFAQLTVSGKRADGRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXRFCLI 623
R+KVK FAQLTVSG R+DG+PCP +K+VILDEADSMT+AAQAAL RFCLI
Sbjct: 120 REKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLI 179
Query: 622 CNYVSRIIPPITSRCSKFRFKPLARENVIKRLREICEAENVDVGEGEILNQAVDTCEGDL 443
CNYVSRII P+TSRCSKFRFKPL+ + +RL +I + ENV + + E + V EGDL
Sbjct: 180 CNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISD-EGIAYLVKVSEGDL 238
Query: 442 RRALTALQCCQRLYG--RITADGLIEVTGLVP-EKLVNEYLSIK--NYSELEEFVQNFLM 278
R+A+T LQ RL G IT + ++ G++P EK+ + + + ++ +LE V++ +
Sbjct: 239 RKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLID 298
Query: 277 RAYSASQLLEQLSATVVAAGHLTNKQKCAISEKTAVCLHRLLDGGSEFMQLTDLGCTLIM 98
++A+QL+ QL VV +L++KQK I+EK A L DG E +QL L C +M
Sbjct: 299 EGHAATQLVNQLH-DVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISL-CATVM 356
Query: 97 ANNNP*C 77
+ C
Sbjct: 357 QQLSQNC 363
>BC017452-1|AAH17452.1| 363|Homo sapiens replication factor C
(activator 1) 4, 37kDa protein.
Length = 363
Score = 199 bits (485), Expect = 1e-50
Identities = 115/247 (46%), Positives = 158/247 (63%), Gaps = 5/247 (2%)
Frame = -3
Query: 802 RDKVKAFAQLTVSGKRADGRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXRFCLI 623
R+KVK FAQLTVSG R+DG+PCP +K+VILDEADSMT+AAQAAL RFCLI
Sbjct: 120 REKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLI 179
Query: 622 CNYVSRIIPPITSRCSKFRFKPLARENVIKRLREICEAENVDVGEGEILNQAVDTCEGDL 443
CNYVSRII P+TSRCSKFRFKPL+ + +RL +I + ENV + + E + V EGDL
Sbjct: 180 CNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISD-EGIAYLVKVSEGDL 238
Query: 442 RRALTALQCCQRLYG--RITADGLIEVTGLVP-EKLVNEYLSIK--NYSELEEFVQNFLM 278
R+A+T LQ RL G IT + ++ G++P EK+ + + + ++ +LE V++ +
Sbjct: 239 RKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLID 298
Query: 277 RAYSASQLLEQLSATVVAAGHLTNKQKCAISEKTAVCLHRLLDGGSEFMQLTDLGCTLIM 98
++A+QL+ QL VV +L++KQK I+EK A L DG E +QL L C +M
Sbjct: 299 EGHAATQLVNQLH-DVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISL-CATVM 356
Query: 97 ANNNP*C 77
+ C
Sbjct: 357 QQLSQNC 363
>AF538718-1|AAM97933.1| 363|Homo sapiens replication factor C
(activator 1) 4 (37kD) protein.
Length = 363
Score = 199 bits (485), Expect = 1e-50
Identities = 115/247 (46%), Positives = 158/247 (63%), Gaps = 5/247 (2%)
Frame = -3
Query: 802 RDKVKAFAQLTVSGKRADGRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXRFCLI 623
R+KVK FAQLTVSG R+DG+PCP +K+VILDEADSMT+AAQAAL RFCLI
Sbjct: 120 REKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLI 179
Query: 622 CNYVSRIIPPITSRCSKFRFKPLARENVIKRLREICEAENVDVGEGEILNQAVDTCEGDL 443
CNYVSRII P+TSRCSKFRFKPL+ + +RL +I + ENV + + E + V EGDL
Sbjct: 180 CNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISD-EGIAYLVKVSEGDL 238
Query: 442 RRALTALQCCQRLYG--RITADGLIEVTGLVP-EKLVNEYLSIK--NYSELEEFVQNFLM 278
R+A+T LQ RL G IT + ++ G++P EK+ + + + ++ +LE V++ +
Sbjct: 239 RKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLID 298
Query: 277 RAYSASQLLEQLSATVVAAGHLTNKQKCAISEKTAVCLHRLLDGGSEFMQLTDLGCTLIM 98
++A+QL+ QL VV +L++KQK I+EK A L DG E +QL L C +M
Sbjct: 299 EGHAATQLVNQLH-DVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISL-CATVM 356
Query: 97 ANNNP*C 77
+ C
Sbjct: 357 QQLSQNC 363
>L07540-1|AAB09784.1| 340|Homo sapiens replication factor C, 36-kDa
subunit protein.
Length = 340
Score = 109 bits (262), Expect = 1e-23
Identities = 56/123 (45%), Positives = 75/123 (60%)
Frame = -3
Query: 730 YKLVILDEADSMTTAAQAALXXXXXXXXXXXRFCLICNYVSRIIPPITSRCSKFRFKPLA 551
+KLVILDEAD+MT AQ AL RFCLICNY+S+IIP + SRC++FRF PL
Sbjct: 119 FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLT 178
Query: 550 RENVIKRLREICEAENVDVGEGEILNQAVDTCEGDLRRALTALQCCQRLYGRITADGLIE 371
E ++ RL + E E VD+ E + + V GD+RRAL LQ +G++T + +
Sbjct: 179 PELMVPRLEHVVEEEKVDISE-DGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYT 237
Query: 370 VTG 362
TG
Sbjct: 238 CTG 240
>CR407651-1|CAG28579.1| 340|Homo sapiens RFC5 protein.
Length = 340
Score = 109 bits (262), Expect = 1e-23
Identities = 56/123 (45%), Positives = 75/123 (60%)
Frame = -3
Query: 730 YKLVILDEADSMTTAAQAALXXXXXXXXXXXRFCLICNYVSRIIPPITSRCSKFRFKPLA 551
+KLVILDEAD+MT AQ AL RFCLICNY+S+IIP + SRC++FRF PL
Sbjct: 119 FKLVILDEADAMTQDAQNALRGVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLT 178
Query: 550 RENVIKRLREICEAENVDVGEGEILNQAVDTCEGDLRRALTALQCCQRLYGRITADGLIE 371
E ++ RL + E E VD+ E + + V GD+RRAL LQ +G++T + +
Sbjct: 179 PELMVPRLEHVVEEEKVDISE-DGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYT 237
Query: 370 VTG 362
TG
Sbjct: 238 CTG 240
>BC013961-1|AAH13961.1| 340|Homo sapiens replication factor C
(activator 1) 5, 36.5kDa protein.
Length = 340
Score = 109 bits (262), Expect = 1e-23
Identities = 56/123 (45%), Positives = 75/123 (60%)
Frame = -3
Query: 730 YKLVILDEADSMTTAAQAALXXXXXXXXXXXRFCLICNYVSRIIPPITSRCSKFRFKPLA 551
+KLVILDEAD+MT AQ AL RFCLICNY+S+IIP + SRC++FRF PL
Sbjct: 119 FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLT 178
Query: 550 RENVIKRLREICEAENVDVGEGEILNQAVDTCEGDLRRALTALQCCQRLYGRITADGLIE 371
E ++ RL + E E VD+ E + + V GD+RRAL LQ +G++T + +
Sbjct: 179 PELMVPRLEHVVEEEKVDISE-DGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYT 237
Query: 370 VTG 362
TG
Sbjct: 238 CTG 240
>BC001866-1|AAH01866.1| 340|Homo sapiens replication factor C
(activator 1) 5, 36.5kDa protein.
Length = 340
Score = 109 bits (262), Expect = 1e-23
Identities = 56/123 (45%), Positives = 75/123 (60%)
Frame = -3
Query: 730 YKLVILDEADSMTTAAQAALXXXXXXXXXXXRFCLICNYVSRIIPPITSRCSKFRFKPLA 551
+KLVILDEAD+MT AQ AL RFCLICNY+S+IIP + SRC++FRF PL
Sbjct: 119 FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLT 178
Query: 550 RENVIKRLREICEAENVDVGEGEILNQAVDTCEGDLRRALTALQCCQRLYGRITADGLIE 371
E ++ RL + E E VD+ E + + V GD+RRAL LQ +G++T + +
Sbjct: 179 PELMVPRLEHVVEEEKVDISE-DGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYT 237
Query: 370 VTG 362
TG
Sbjct: 238 CTG 240
>AY254323-1|AAO63493.1| 340|Homo sapiens replication factor C
(activator 1) 5, 36.5kDa protein.
Length = 340
Score = 109 bits (262), Expect = 1e-23
Identities = 56/123 (45%), Positives = 75/123 (60%)
Frame = -3
Query: 730 YKLVILDEADSMTTAAQAALXXXXXXXXXXXRFCLICNYVSRIIPPITSRCSKFRFKPLA 551
+KLVILDEAD+MT AQ AL RFCLICNY+S+IIP + SRC++FRF PL
Sbjct: 119 FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLT 178
Query: 550 RENVIKRLREICEAENVDVGEGEILNQAVDTCEGDLRRALTALQCCQRLYGRITADGLIE 371
E ++ RL + E E VD+ E + + V GD+RRAL LQ +G++T + +
Sbjct: 179 PELMVPRLEHVVEEEKVDISE-DGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYT 237
Query: 370 VTG 362
TG
Sbjct: 238 CTG 240
>AB208992-1|BAD92229.1| 351|Homo sapiens replication factor C 5
isoform 1 variant protein.
Length = 351
Score = 109 bits (262), Expect = 1e-23
Identities = 56/123 (45%), Positives = 75/123 (60%)
Frame = -3
Query: 730 YKLVILDEADSMTTAAQAALXXXXXXXXXXXRFCLICNYVSRIIPPITSRCSKFRFKPLA 551
+KLVILDEAD+MT AQ AL RFCLICNY+S+IIP + SRC++FRF PL
Sbjct: 133 FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLT 192
Query: 550 RENVIKRLREICEAENVDVGEGEILNQAVDTCEGDLRRALTALQCCQRLYGRITADGLIE 371
E ++ RL + E E VD+ E + + V GD+RRAL LQ +G++T + +
Sbjct: 193 PELMVPRLEHVVEEEKVDISE-DGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYT 251
Query: 370 VTG 362
TG
Sbjct: 252 CTG 254
>M87338-1|AAB09786.1| 354|Homo sapiens replication factor C, 40-kDa
subunit protein.
Length = 354
Score = 85.0 bits (201), Expect = 3e-16
Identities = 57/158 (36%), Positives = 82/158 (51%)
Frame = -3
Query: 802 RDKVKAFAQLTVSGKRADGRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXRFCLI 623
R+K+K FAQ V+ + GR +K++ILDEADSMT AQ AL RF L
Sbjct: 117 RNKIKMFAQQKVTLPK--GR----HKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALA 170
Query: 622 CNYVSRIIPPITSRCSKFRFKPLARENVIKRLREICEAENVDVGEGEILNQAVDTCEGDL 443
CN +II PI SRC+ R+ L ++ RL + E E V + + L + T +GD+
Sbjct: 171 CNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTD-DGLEAIIFTAQGDM 229
Query: 442 RRALTALQCCQRLYGRITADGLIEVTGLVPEKLVNEYL 329
R+AL LQ +G I ++ + +V LV E +
Sbjct: 230 RQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMI 267
>AF045555-4|AAC04860.1| 354|Homo sapiens replication factor C
subunit 2 protein.
Length = 354
Score = 85.0 bits (201), Expect = 3e-16
Identities = 57/158 (36%), Positives = 82/158 (51%)
Frame = -3
Query: 802 RDKVKAFAQLTVSGKRADGRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXRFCLI 623
R+K+K FAQ V+ + GR +K++ILDEADSMT AQ AL RF L
Sbjct: 117 RNKIKMFAQQKVTLPK--GR----HKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALA 170
Query: 622 CNYVSRIIPPITSRCSKFRFKPLARENVIKRLREICEAENVDVGEGEILNQAVDTCEGDL 443
CN +II PI SRC+ R+ L ++ RL + E E V + + L + T +GD+
Sbjct: 171 CNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTD-DGLEAIIFTAQGDM 229
Query: 442 RRALTALQCCQRLYGRITADGLIEVTGLVPEKLVNEYL 329
R+AL LQ +G I ++ + +V LV E +
Sbjct: 230 RQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMI 267
>AC005081-1|AAP22334.1| 354|Homo sapiens unknown protein.
Length = 354
Score = 85.0 bits (201), Expect = 3e-16
Identities = 57/158 (36%), Positives = 82/158 (51%)
Frame = -3
Query: 802 RDKVKAFAQLTVSGKRADGRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXRFCLI 623
R+K+K FAQ V+ + GR +K++ILDEADSMT AQ AL RF L
Sbjct: 117 RNKIKMFAQQKVTLPK--GR----HKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALA 170
Query: 622 CNYVSRIIPPITSRCSKFRFKPLARENVIKRLREICEAENVDVGEGEILNQAVDTCEGDL 443
CN +II PI SRC+ R+ L ++ RL + E E V + + L + T +GD+
Sbjct: 171 CNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTD-DGLEAIIFTAQGDM 229
Query: 442 RRALTALQCCQRLYGRITADGLIEVTGLVPEKLVNEYL 329
R+AL LQ +G I ++ + +V LV E +
Sbjct: 230 RQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMI 267
>BT007058-1|AAP35707.1| 320|Homo sapiens replication factor C
(activator 1) 2, 40kDa protein.
Length = 320
Score = 65.7 bits (153), Expect = 2e-10
Identities = 42/125 (33%), Positives = 60/125 (48%)
Frame = -3
Query: 703 DSMTTAAQAALXXXXXXXXXXXRFCLICNYVSRIIPPITSRCSKFRFKPLARENVIKRLR 524
DSMT AQ AL RF L CN +II PI SRC+ R+ L ++ RL
Sbjct: 110 DSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLM 169
Query: 523 EICEAENVDVGEGEILNQAVDTCEGDLRRALTALQCCQRLYGRITADGLIEVTGLVPEKL 344
+ E E V + + L + T +GD+R+AL LQ +G I ++ + +V L
Sbjct: 170 NVIEKERVPYTD-DGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLL 228
Query: 343 VNEYL 329
V E +
Sbjct: 229 VKEMI 233
>BC002813-1|AAH02813.1| 320|Homo sapiens replication factor C
(activator 1) 2, 40kDa protein.
Length = 320
Score = 65.7 bits (153), Expect = 2e-10
Identities = 42/125 (33%), Positives = 60/125 (48%)
Frame = -3
Query: 703 DSMTTAAQAALXXXXXXXXXXXRFCLICNYVSRIIPPITSRCSKFRFKPLARENVIKRLR 524
DSMT AQ AL RF L CN +II PI SRC+ R+ L ++ RL
Sbjct: 110 DSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLM 169
Query: 523 EICEAENVDVGEGEILNQAVDTCEGDLRRALTALQCCQRLYGRITADGLIEVTGLVPEKL 344
+ E E V + + L + T +GD+R+AL LQ +G I ++ + +V L
Sbjct: 170 NVIEKERVPYTD-DGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLL 228
Query: 343 VNEYL 329
V E +
Sbjct: 229 VKEMI 233
>AF483622-1|AAL82503.1| 320|Homo sapiens replication factor C
(activator 1) 2 (40kD) protein.
Length = 320
Score = 65.7 bits (153), Expect = 2e-10
Identities = 42/125 (33%), Positives = 60/125 (48%)
Frame = -3
Query: 703 DSMTTAAQAALXXXXXXXXXXXRFCLICNYVSRIIPPITSRCSKFRFKPLARENVIKRLR 524
DSMT AQ AL RF L CN +II PI SRC+ R+ L ++ RL
Sbjct: 110 DSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLM 169
Query: 523 EICEAENVDVGEGEILNQAVDTCEGDLRRALTALQCCQRLYGRITADGLIEVTGLVPEKL 344
+ E E V + + L + T +GD+R+AL LQ +G I ++ + +V L
Sbjct: 170 NVIEKERVPYTD-DGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLL 228
Query: 343 VNEYL 329
V E +
Sbjct: 229 VKEMI 233
>AC005081-2|AAP22335.1| 320|Homo sapiens unknown protein.
Length = 320
Score = 65.7 bits (153), Expect = 2e-10
Identities = 42/125 (33%), Positives = 60/125 (48%)
Frame = -3
Query: 703 DSMTTAAQAALXXXXXXXXXXXRFCLICNYVSRIIPPITSRCSKFRFKPLARENVIKRLR 524
DSMT AQ AL RF L CN +II PI SRC+ R+ L ++ RL
Sbjct: 110 DSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLM 169
Query: 523 EICEAENVDVGEGEILNQAVDTCEGDLRRALTALQCCQRLYGRITADGLIEVTGLVPEKL 344
+ E E V + + L + T +GD+R+AL LQ +G I ++ + +V L
Sbjct: 170 NVIEKERVPYTD-DGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLL 228
Query: 343 VNEYL 329
V E +
Sbjct: 229 VKEMI 233
>L07541-1|AAB07268.1| 356|Homo sapiens replication factor C, 38-kDa
subunit protein.
Length = 356
Score = 60.1 bits (139), Expect = 9e-09
Identities = 39/122 (31%), Positives = 58/122 (47%)
Frame = -3
Query: 730 YKLVILDEADSMTTAAQAALXXXXXXXXXXXRFCLICNYVSRIIPPITSRCSKFRFKPLA 551
+K+V+L E D +T AQ AL R L CN S++IPPI SRC R +
Sbjct: 129 FKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPS 188
Query: 550 RENVIKRLREICEAENVDVGEGEILNQAVDTCEGDLRRALTALQCCQRLYGRITADGLIE 371
E++ L +C+ E +++ A +C +LR+AL + C+ TAD I
Sbjct: 189 IEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCR-NLRKALLMCEACRVQQYPFTADQEIP 247
Query: 370 VT 365
T
Sbjct: 248 ET 249
>BT019668-1|AAV38474.1| 356|Homo sapiens replication factor C
(activator 1) 3, 38kDa protein.
Length = 356
Score = 60.1 bits (139), Expect = 9e-09
Identities = 39/122 (31%), Positives = 58/122 (47%)
Frame = -3
Query: 730 YKLVILDEADSMTTAAQAALXXXXXXXXXXXRFCLICNYVSRIIPPITSRCSKFRFKPLA 551
+K+V+L E D +T AQ AL R L CN S++IPPI SRC R +
Sbjct: 129 FKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPS 188
Query: 550 RENVIKRLREICEAENVDVGEGEILNQAVDTCEGDLRRALTALQCCQRLYGRITADGLIE 371
E++ L +C+ E +++ A +C +LR+AL + C+ TAD I
Sbjct: 189 IEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCR-NLRKALLMCEACRVQQYPFTADQEIP 247
Query: 370 VT 365
T
Sbjct: 248 ET 249
>BC000149-1|AAH00149.1| 356|Homo sapiens replication factor C
(activator 1) 3, 38kDa protein.
Length = 356
Score = 60.1 bits (139), Expect = 9e-09
Identities = 39/122 (31%), Positives = 58/122 (47%)
Frame = -3
Query: 730 YKLVILDEADSMTTAAQAALXXXXXXXXXXXRFCLICNYVSRIIPPITSRCSKFRFKPLA 551
+K+V+L E D +T AQ AL R L CN S++IPPI SRC R +
Sbjct: 129 FKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPS 188
Query: 550 RENVIKRLREICEAENVDVGEGEILNQAVDTCEGDLRRALTALQCCQRLYGRITADGLIE 371
E++ L +C+ E +++ A +C +LR+AL + C+ TAD I
Sbjct: 189 IEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCR-NLRKALLMCEACRVQQYPFTADQEIP 247
Query: 370 VT 365
T
Sbjct: 248 ET 249
>AL139081-1|CAH70947.1| 356|Homo sapiens replication factor C
(activator 1) 3, 38kDa protein.
Length = 356
Score = 60.1 bits (139), Expect = 9e-09
Identities = 39/122 (31%), Positives = 58/122 (47%)
Frame = -3
Query: 730 YKLVILDEADSMTTAAQAALXXXXXXXXXXXRFCLICNYVSRIIPPITSRCSKFRFKPLA 551
+K+V+L E D +T AQ AL R L CN S++IPPI SRC R +
Sbjct: 129 FKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPS 188
Query: 550 RENVIKRLREICEAENVDVGEGEILNQAVDTCEGDLRRALTALQCCQRLYGRITADGLIE 371
E++ L +C+ E +++ A +C +LR+AL + C+ TAD I
Sbjct: 189 IEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCR-NLRKALLMCEACRVQQYPFTADQEIP 247
Query: 370 VT 365
T
Sbjct: 248 ET 249
>AF484446-1|AAL82505.1| 356|Homo sapiens replication factor C
(activator 1) 3 (38kD) protein.
Length = 356
Score = 60.1 bits (139), Expect = 9e-09
Identities = 39/122 (31%), Positives = 58/122 (47%)
Frame = -3
Query: 730 YKLVILDEADSMTTAAQAALXXXXXXXXXXXRFCLICNYVSRIIPPITSRCSKFRFKPLA 551
+K+V+L E D +T AQ AL R L CN S++IPPI SRC R +
Sbjct: 129 FKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPS 188
Query: 550 RENVIKRLREICEAENVDVGEGEILNQAVDTCEGDLRRALTALQCCQRLYGRITADGLIE 371
E++ L +C+ E +++ A +C +LR+AL + C+ TAD I
Sbjct: 189 IEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCR-NLRKALLMCEACRVQQYPFTADQEIP 247
Query: 370 VT 365
T
Sbjct: 248 ET 249
>AK222572-1|BAD96292.1| 356|Homo sapiens replication factor C 3
isoform 1 variant protein.
Length = 356
Score = 59.7 bits (138), Expect = 1e-08
Identities = 39/122 (31%), Positives = 57/122 (46%)
Frame = -3
Query: 730 YKLVILDEADSMTTAAQAALXXXXXXXXXXXRFCLICNYVSRIIPPITSRCSKFRFKPLA 551
+K+V+L E D +T AQ AL R L CN S++IPPI SRC R +
Sbjct: 129 FKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPS 188
Query: 550 RENVIKRLREICEAENVDVGEGEILNQAVDTCEGDLRRALTALQCCQRLYGRITADGLIE 371
E + L +C+ E +++ A +C +LR+AL + C+ TAD I
Sbjct: 189 IEGICHVLSTVCKKEGLNLPSQLAHRLAEKSCR-NLRKALLMCEACRVQQYPFTADQEIP 247
Query: 370 VT 365
T
Sbjct: 248 ET 249
>BC057389-1|AAH57389.1| 213|Homo sapiens HS1BP3 protein protein.
Length = 213
Score = 31.5 bits (68), Expect = 3.7
Identities = 21/66 (31%), Positives = 34/66 (51%)
Frame = -3
Query: 355 PEKLVNEYLSIKNYSELEEFVQNFLMRAYSASQLLEQLSATVVAAGHLTNKQKCAISEKT 176
PE +V ++L K YSE+EEF Q R +AS L L V+ G +++ A+ +
Sbjct: 59 PEDVV-QFLVSKKYSEIEEFYQKLSSRYAAAS--LPPLPRKVLFVGESDIRERRAVFNEI 115
Query: 175 AVCLHR 158
C+ +
Sbjct: 116 LRCVSK 121
>BC050636-1|AAH50636.1| 392|Homo sapiens HCLS1 binding protein 3
protein.
Length = 392
Score = 31.5 bits (68), Expect = 3.7
Identities = 21/66 (31%), Positives = 34/66 (51%)
Frame = -3
Query: 355 PEKLVNEYLSIKNYSELEEFVQNFLMRAYSASQLLEQLSATVVAAGHLTNKQKCAISEKT 176
PE +V ++L K YSE+EEF Q R +AS L L V+ G +++ A+ +
Sbjct: 59 PEDVV-QFLVSKKYSEIEEFYQKLSSRYAAAS--LPPLPRKVLFVGESDIRERRAVFNEI 115
Query: 175 AVCLHR 158
C+ +
Sbjct: 116 LRCVSK 121
>BC027947-1|AAH27947.1| 213|Homo sapiens HS1BP3 protein protein.
Length = 213
Score = 31.5 bits (68), Expect = 3.7
Identities = 21/66 (31%), Positives = 34/66 (51%)
Frame = -3
Query: 355 PEKLVNEYLSIKNYSELEEFVQNFLMRAYSASQLLEQLSATVVAAGHLTNKQKCAISEKT 176
PE +V ++L K YSE+EEF Q R +AS L L V+ G +++ A+ +
Sbjct: 59 PEDVV-QFLVSKKYSEIEEFYQKLSSRYAAAS--LPPLPRKVLFVGESDIRERRAVFNEI 115
Query: 175 AVCLHR 158
C+ +
Sbjct: 116 LRCVSK 121
>AK024311-1|BAB14878.1| 302|Homo sapiens protein ( Homo sapiens
cDNA FLJ14249 fis, clone OVARC1001200, weakly similar to
Mus musculus mRNA for HS1 binding protein 3. ).
Length = 302
Score = 31.5 bits (68), Expect = 3.7
Identities = 21/66 (31%), Positives = 34/66 (51%)
Frame = -3
Query: 355 PEKLVNEYLSIKNYSELEEFVQNFLMRAYSASQLLEQLSATVVAAGHLTNKQKCAISEKT 176
PE +V ++L K YSE+EEF Q R +AS L L V+ G +++ A+ +
Sbjct: 59 PEDVV-QFLVSKKYSEIEEFYQKLSSRYAAAS--LPPLPRKVLFVGESDIRERRAVFNEI 115
Query: 175 AVCLHR 158
C+ +
Sbjct: 116 LRCVSK 121
>AC012065-1|AAX93235.1| 392|Homo sapiens unknown protein.
Length = 392
Score = 31.5 bits (68), Expect = 3.7
Identities = 21/66 (31%), Positives = 34/66 (51%)
Frame = -3
Query: 355 PEKLVNEYLSIKNYSELEEFVQNFLMRAYSASQLLEQLSATVVAAGHLTNKQKCAISEKT 176
PE +V ++L K YSE+EEF Q R +AS L L V+ G +++ A+ +
Sbjct: 59 PEDVV-QFLVSKKYSEIEEFYQKLSSRYAAAS--LPPLPRKVLFVGESDIRERRAVFNEI 115
Query: 175 AVCLHR 158
C+ +
Sbjct: 116 LRCVSK 121
>M62424-1|AAA36743.1| 425|Homo sapiens thrombin receptor protein.
Length = 425
Score = 30.3 bits (65), Expect = 8.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 123 VSCMNSDPPSSRRCRQTAVFSLMAHFCLFVRCPAATTVAL 242
+ C++S ++R + A+F A FC+F+ C T V L
Sbjct: 294 IRCLSSSAVANRSKKSRALFLSAAVFCIFIICFGPTNVLL 333
>BT007279-1|AAP35943.1| 425|Homo sapiens coagulation factor II
(thrombin) receptor protein.
Length = 425
Score = 30.3 bits (65), Expect = 8.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 123 VSCMNSDPPSSRRCRQTAVFSLMAHFCLFVRCPAATTVAL 242
+ C++S ++R + A+F A FC+F+ C T V L
Sbjct: 294 IRCLSSSAVANRSKKSRALFLSAAVFCIFIICFGPTNVLL 333
>BC051909-1|AAH51909.1| 425|Homo sapiens coagulation factor II
(thrombin) receptor protein.
Length = 425
Score = 30.3 bits (65), Expect = 8.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 123 VSCMNSDPPSSRRCRQTAVFSLMAHFCLFVRCPAATTVAL 242
+ C++S ++R + A+F A FC+F+ C T V L
Sbjct: 294 IRCLSSSAVANRSKKSRALFLSAAVFCIFIICFGPTNVLL 333
>BC002464-1|AAH02464.1| 425|Homo sapiens coagulation factor II
(thrombin) receptor protein.
Length = 425
Score = 30.3 bits (65), Expect = 8.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 123 VSCMNSDPPSSRRCRQTAVFSLMAHFCLFVRCPAATTVAL 242
+ C++S ++R + A+F A FC+F+ C T V L
Sbjct: 294 IRCLSSSAVANRSKKSRALFLSAAVFCIFIICFGPTNVLL 333
>AF391809-1|AAK69768.1| 425|Homo sapiens coagulation factor II
(thrombin) receptor protein.
Length = 425
Score = 30.3 bits (65), Expect = 8.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 123 VSCMNSDPPSSRRCRQTAVFSLMAHFCLFVRCPAATTVAL 242
+ C++S ++R + A+F A FC+F+ C T V L
Sbjct: 294 IRCLSSSAVANRSKKSRALFLSAAVFCIFIICFGPTNVLL 333
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,110,930
Number of Sequences: 237096
Number of extensions: 2214931
Number of successful extensions: 6140
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 5715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6091
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9924838204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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