Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13g06
         (804 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    24   1.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   1.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   1.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.8  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +1

Query: 223 PPQPWHSTVPEAAMPNTLASGNSEQIP 303
           P +PWH  +    +PN+      E  P
Sbjct: 82  PIEPWHGVLNATVLPNSCYQERYEYFP 108


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +1

Query: 223 PPQPWHSTVPEAAMPNTLASGNSEQIP 303
           P +PWH  +    +PN+      E  P
Sbjct: 82  PIEPWHGVLNATVLPNSCYQERYEYFP 108


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +1

Query: 394 SCRTTFGNTVVLLALCAD-HLH 456
           S  T FGNT+V+LA+  + +LH
Sbjct: 56  SVATVFGNTLVILAVVRERYLH 77


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 397 CRTTFGNTVVLLAL 438
           C T FGN +V+LA+
Sbjct: 198 CLTLFGNVLVILAV 211



 Score = 21.8 bits (44), Expect = 7.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 447 SPSQVSTAWFRISPSPTSTFSASHISRNRLITFSLAN 557
           SPS  S + F  S SPTS  S ++   + L  F   N
Sbjct: 90  SPSPSSPSSFFSSVSPTSLGSENYTGISDLFVFDDLN 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,464
Number of Sequences: 438
Number of extensions: 4361
Number of successful extensions: 33
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)