Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13g04
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc...    52   4e-08
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc...    52   4e-08
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    29   0.32 
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    29   0.32 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   0.74 
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    27   0.98 
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    27   0.98 
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy...    26   1.7  
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc...    25   3.9  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    24   6.9  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         24   6.9  
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   6.9  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    24   6.9  
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    24   9.1  

>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 88

 Score = 51.6 bits (118), Expect = 4e-08
 Identities = 22/50 (44%), Positives = 38/50 (76%)
 Frame = -3

Query: 220 LFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIK 71
           +FDK   +++ KEVP +K I+ +V+ +R+K+ GSLAR A+ +L E+G+I+
Sbjct: 21  VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQ 70


>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 51.6 bits (118), Expect = 4e-08
 Identities = 22/50 (44%), Positives = 38/50 (76%)
 Frame = -3

Query: 220 LFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIK 71
           +FDK   +++ KEVP +K I+ +V+ +R+K+ GSLAR A+ +L E+G+I+
Sbjct: 21  VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQ 70


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 28.7 bits (61), Expect = 0.32
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +3

Query: 96  SMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPLDHFFFL 275
           S+SA        FNL+    GV ++  G S  +F+ + + +  W F +    P+D   FL
Sbjct: 139 SLSADTIGRRWAFNLTFLFTGVFAVIAGASP-NFASICVFDALWSFGVGGNLPVDSAIFL 197

Query: 276 -ALP 284
            ALP
Sbjct: 198 EALP 201


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 28.7 bits (61), Expect = 0.32
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 199 HMWVYQTTPGCSTCHELFLWTTSSSWLCRHRILPSSSV 312
           +M  YQ TP     HE   WT SS  L  H + PS+ +
Sbjct: 152 YMRAYQLTPEFMAAHEEKTWTASS--LNSHNLTPSNVI 187


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.5 bits (58), Expect = 0.74
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 192  SFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPP 290
            SF Y  L NN++L  +S +   ++ F++  PPP
Sbjct: 1008 SFIYGSLQNNSFLSRVSPSSLEENVFYIQHPPP 1040


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 27.1 bits (57), Expect = 0.98
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 318 KKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRC 220
           K HR    DP+   P RR GP  + V +   +C
Sbjct: 203 KVHRPNHFDPLVKLPTRRRGPGRRPVVALAMKC 235


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 27.1 bits (57), Expect = 0.98
 Identities = 17/75 (22%), Positives = 29/75 (38%)
 Frame = +3

Query: 54  GVGLPXLMRPFSLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLF 233
           GVG   L+ PFSL+S +    + P    +      ++  Y G  ++   Y          
Sbjct: 310 GVGWSILLLPFSLTSYAKNGWKNPSMIAMMVVGGVILIAYSGYEMFIAPYPSCPRRVMNR 369

Query: 234 NLSRTFPLDHFFFLA 278
                  +D F++LA
Sbjct: 370 TFITAVIIDFFYYLA 384


>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 613

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
 Frame = +3

Query: 84  FSLSSMSALLAREPRTFN--LSDTTAGVISLYCGTSLYSFSYVGLSNNT---WLFNLSRT 248
           F  S M+ +  +    FN  LSD    VIS   G + Y F  V LS+ T   W  N +  
Sbjct: 203 FYSSIMNEVAEKANAGFNISLSDYWGRVISRTLGDTTYGFPNVSLSSITSQEWYRNANFP 262

Query: 249 FPLDHF 266
           +P+  F
Sbjct: 263 YPIITF 268


>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 150

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 159 VISLYCGTSLYSFSYV-GLSNNTWLFNLSRTFPLDHFFFLALPPP 290
           V+ + C  +L  F ++ G+ N         T P  +F+ L  PPP
Sbjct: 37  VVVIICIAALIFFFFIIGIINRRRTKKGQATIPFTNFYPLTAPPP 81


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = -3

Query: 226 QVLFDKPTYEKLYKEVPQYKLITPAVVSE----RLKVRGSLARRALIELREKGLIKXGSP 59
           Q++ D P ++ L+  +P   L  P +       +L + GS++R +++    +G    G  
Sbjct: 543 QLMSDAPAHQ-LFVLLPPVDLKNPKLPDPICVIQLALEGSISRESIMNSLSRGQRAGGDL 601

Query: 58  TPW 50
            PW
Sbjct: 602 IPW 604


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 213 SNNTWLFNLSRTFPLDHFFFLAL 281
           S N+W+F L  TF     F+L+L
Sbjct: 316 SRNSWIFTLLLTFTQLTIFYLSL 338


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 271 SWLCRHRILPSSSVFFEAVW 330
           +WL +  ++PSSS F  + W
Sbjct: 131 AWLEKQELVPSSSNFLNSFW 150


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +3

Query: 93   SSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNT--WLFNLSRTFP 254
            S+ S  L+ EP+TF+ S T +  IS     SL       LS++T   L + S T P
Sbjct: 946  SASSNTLSTEPKTFSSSSTLSESISSINTNSLTVKPESSLSSSTTSGLTSSSSTIP 1001


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 205 TYEKLYKEVPQYKLITPAVVS 143
           TY+K+Y E P  K++   + S
Sbjct: 96  TYKKIYNEYPPTKILVQEIAS 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,580,854
Number of Sequences: 5004
Number of extensions: 31569
Number of successful extensions: 135
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)