Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13g04
(378 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0339 - 22400534-22400647,22401264-22401398,22401491-224015... 78 3e-15
08_02_1576 + 27965862-27965864,27965952-27966026,27966113-279662... 77 6e-15
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 56 1e-08
03_05_0586 - 25875703-25876332,25876426-25876713,25877064-258771... 31 0.30
03_02_0025 + 5084003-5084303,5084449-5084639,5084793-5084873,508... 28 2.8
06_03_1117 + 27750291-27750338,27751360-27751812,27751987-277521... 27 3.7
05_04_0409 - 21050479-21050637,21050732-21050872,21051170-210515... 27 3.7
04_03_0989 - 21475147-21475361,21477029-21477074,21477364-21479292 27 3.7
04_03_0916 + 20794240-20794246,20794585-20796545 27 3.7
02_03_0349 + 18010414-18014283 27 3.7
10_05_0041 - 8469769-8470164 27 4.9
03_05_0742 + 27310404-27310457,27311281-27311286,27311350-273114... 27 4.9
12_02_1263 + 27423411-27423464,27423985-27424104,27424200-274242... 27 6.5
10_01_0146 - 1719997-1720386,1721498-1721515 27 6.5
08_02_1597 + 28128956-28129095,28129115-28129562 27 6.5
01_06_1624 + 38725452-38725537,38725823-38725844,38726194-38728038 27 6.5
11_06_0621 + 25587476-25587604,25588230-25588423,25588800-255888... 26 8.6
10_08_1023 - 22341815-22342042,22342179-22342247,22342717-223428... 26 8.6
05_01_0049 - 337132-337488,337613-337765,337924-338551,338617-33... 26 8.6
04_04_0176 - 23329589-23331043 26 8.6
03_06_0766 - 36106116-36106230,36106598-36106716,36106880-361069... 26 8.6
02_05_0114 + 25958834-25961296 26 8.6
>09_06_0339 -
22400534-22400647,22401264-22401398,22401491-22401565,
22401646-22401648
Length = 108
Score = 77.8 bits (183), Expect = 3e-15
Identities = 34/55 (61%), Positives = 47/55 (85%)
Frame = -3
Query: 235 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIK 71
+NN VLFD+ TY+KL EVP+YK ITP+V+SERL++ GSLARRA+ +L ++GLI+
Sbjct: 37 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAMKDLMDRGLIR 91
>08_02_1576 +
27965862-27965864,27965952-27966026,27966113-27966247,
27967080-27967193
Length = 108
Score = 76.6 bits (180), Expect = 6e-15
Identities = 34/55 (61%), Positives = 46/55 (83%)
Frame = -3
Query: 235 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIK 71
+NN VLFD+ TY+KL EVP+YK ITP+V+SERL++ GSLARRA+ +L +GLI+
Sbjct: 37 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAINDLMTRGLIR 91
>11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 55.6 bits (128), Expect = 1e-08
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = -3
Query: 235 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLK 131
+NN VLFDK TY+KL EVP+YK ITP+V+SERL+
Sbjct: 971 VNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLR 1005
>03_05_0586 -
25875703-25876332,25876426-25876713,25877064-25877194,
25877299-25877812
Length = 520
Score = 31.1 bits (67), Expect = 0.30
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 344 REGFGQTASKNTEEEGRIRWRQSQEEEVVQRKSS*QVEQPGV 219
R G G + + E G+ +WR+ +EEE Q+K + E+ V
Sbjct: 345 RGGRGGESEERRRERGKGKWREEEEEEEEQQKGQEEEEEEQV 386
>03_02_0025 +
5084003-5084303,5084449-5084639,5084793-5084873,
5084972-5085319,5085409-5086293
Length = 601
Score = 27.9 bits (59), Expect = 2.8
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2
Query: 377 AFQFKDAAQEGREGFGQTASKNTEEEGRIRWRQSQEEE 264
A + + A+E EG G K EEE R R R+ +EEE
Sbjct: 461 AEELERKAEEEEEGGGGKGEKEREEEER-RQREKEEEE 497
>06_03_1117 +
27750291-27750338,27751360-27751812,27751987-27752161,
27752227-27752551,27752705-27752786,27752820-27752889,
27753341-27753420,27753514-27753750
Length = 489
Score = 27.5 bits (58), Expect = 3.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 338 GFGQTASKNTEEEGRIRWRQSQEEEVVQRKSS*QVEQPG 222
GFG S N+ +RWR + +++ Q Q ++PG
Sbjct: 427 GFGIAISANSMLVEYLRWRSRRNQQLAQTVDDGQRQEPG 465
>05_04_0409 -
21050479-21050637,21050732-21050872,21051170-21051541,
21051699-21051701
Length = 224
Score = 27.5 bits (58), Expect = 3.7
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -3
Query: 124 GSLARRALIELREKGLIKXGSPTPWAGDLPARATKGDDP 8
GS L+ L + I+ +P PW P+ A D+P
Sbjct: 157 GSSPTTTLLRLETEAPIRAAAPDPWRHHHPSAARSWDEP 195
>04_03_0989 - 21475147-21475361,21477029-21477074,21477364-21479292
Length = 729
Score = 27.5 bits (58), Expect = 3.7
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 247 LFLWTTSSSWLCRHRILPSSSVFFEAVWPKPSRPSWAASL 366
+F W S L R+R+L + F+A+ P + SWAA L
Sbjct: 65 VFTWNCMVSGLIRNRMLAEARKVFDAM-PVRNSVSWAALL 103
>04_03_0916 + 20794240-20794246,20794585-20796545
Length = 655
Score = 27.5 bits (58), Expect = 3.7
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 145 IRQQV*LACTVGLPCTVSH-MWVYQTTPGCSTCHELFLWTTSSSWLCRHRI 294
I Q + L +G C + VY+ P S H+LF T+ +W R+ I
Sbjct: 399 IIQHINLVKLIGFCCEGGRRLLVYEHMPNRSLDHQLFQTNTTLTWNIRYEI 449
>02_03_0349 + 18010414-18014283
Length = 1289
Score = 27.5 bits (58), Expect = 3.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 211 KPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELRE 86
KPT E+L K +PQ K++ AV E + + L +LR+
Sbjct: 39 KPTRERLEKLLPQIKVVLDAVDMEHIGDQSDALDAWLWQLRD 80
>10_05_0041 - 8469769-8470164
Length = 131
Score = 27.1 bits (57), Expect = 4.9
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -2
Query: 359 AAQEGREGFGQTASKNTEEEGRIRWRQSQEEEV 261
A + GREG G+ +S ++ R RW+ +++
Sbjct: 31 ARERGREGGGEASSTTIDDGERRRWQDGLRDDL 63
>03_05_0742 +
27310404-27310457,27311281-27311286,27311350-27311469,
27311597-27311695,27311787-27311795,27311843-27311980,
27312084-27312218,27312308-27312517,27312592-27312798,
27312891-27313010,27313079-27313198,27313279-27313401,
27313501-27313605,27313764-27313908,27314658-27315148,
27315236-27315268,27315556-27315637,27315747-27315907,
27316021-27316206,27316294-27316476,27316573-27316751,
27317009-27317105
Length = 1000
Score = 27.1 bits (57), Expect = 4.9
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +3
Query: 132 FNLSDTTAGVISLYCGTSLYSFSYVGL--SNNTWLFNLSRTFPLDHFFFL 275
F ++ A +I++Y + S +G + WL+NL FPLD FL
Sbjct: 843 FFVAQLIATLIAVYANWAFTSIKGIGWGWAGIVWLYNLVFYFPLDIIKFL 892
>12_02_1263 +
27423411-27423464,27423985-27424104,27424200-27424298,
27424405-27424542,27424647-27424706,27424865-27425044,
27425132-27425338,27425415-27425534,27425609-27425728,
27425819-27425941,27426074-27426178,27426379-27426523,
27426967-27427131,27427228-27427466,27427553-27427585,
27427894-27427975,27428100-27428260,27428422-27428607,
27428700-27428882,27428969-27429147,27429386-27429482
Length = 931
Score = 26.6 bits (56), Expect = 6.5
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +3
Query: 132 FNLSDTTAGVISLYCGTSLYSFSYVGL--SNNTWLFNLSRTFPLDHFFFL 275
F ++ A +I++Y + S +G + WL+NL FPLD FL
Sbjct: 774 FLVAQLIATLIAVYADWAFTSIKGIGWGWAGIVWLYNLIFYFPLDIIKFL 823
>10_01_0146 - 1719997-1720386,1721498-1721515
Length = 135
Score = 26.6 bits (56), Expect = 6.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 330 PNSLKKHRRRRKDPVAAKPRRRS 262
P+ + RRRR +P +PRRR+
Sbjct: 83 PDDGGQRRRRRSEPATTQPRRRA 105
>08_02_1597 + 28128956-28129095,28129115-28129562
Length = 195
Score = 26.6 bits (56), Expect = 6.5
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -3
Query: 118 LARRALIELREKGLIKXGSPTPWAGDLPARATKGDDPSR 2
LAR L+E E GL + G+ G L AR G D R
Sbjct: 79 LARHRLVEGLETGLAQRGAADGSGGRLGARDAGGGDGGR 117
>01_06_1624 + 38725452-38725537,38725823-38725844,38726194-38728038
Length = 650
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +3
Query: 87 SLSSMSALLAREPRTFNLSDTTAGV---ISLYCGT 182
S S + R+P ++NL D TAG + L CG+
Sbjct: 173 SCSCLKGFSIRDPNSWNLGDQTAGCRRNVMLQCGS 207
>11_06_0621 +
25587476-25587604,25588230-25588423,25588800-25588874,
25589434-25591852
Length = 938
Score = 26.2 bits (55), Expect = 8.6
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 172 TVGLPCTVSHMWVYQTTPGCSTCHELFLWTTSSSWLCRHRILPS 303
T PC++S M V C TC+++ S +CR ++PS
Sbjct: 264 TCATPCSLSFM-VDCLIKACITCYDVQATICLFSGICRLGVVPS 306
>10_08_1023 -
22341815-22342042,22342179-22342247,22342717-22342840,
22343193-22343317,22343815-22344276,22344357-22344700,
22345061-22345406,22345492-22345941,22346760-22347051,
22347171-22347515,22347611-22347834,22348072-22348563,
22348664-22349056,22349601-22349741,22349845-22350207,
22350494-22352683,22353298-22353360,22353434-22353535,
22353672-22354027,22354326-22354413,22354517-22354750,
22355508-22355975
Length = 2632
Score = 26.2 bits (55), Expect = 8.6
Identities = 18/55 (32%), Positives = 22/55 (40%)
Frame = +3
Query: 21 LVARAGRSPAHGVGLPXLMRPFSLSSMSALLAREPRTFNLSDTTAGVISLYCGTS 185
LV R AHG ++RP S S A EP+ F I +Y TS
Sbjct: 369 LVIVVSRDEAHGPWA-IIVRPLSTVSALVRFAEEPQMFAFEFNDGCPIHVYASTS 422
>05_01_0049 -
337132-337488,337613-337765,337924-338551,338617-338852,
339563-339577
Length = 462
Score = 26.2 bits (55), Expect = 8.6
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = +1
Query: 232 STCHELFLWTTSSSWLCRHRILPSSSVFF--EAVWPKPSRP 348
STCH++ L S WL L S + F E VW P P
Sbjct: 261 STCHKMQLPFKLSDWLSTVPTLTSLHLDFQDEMVWILPEEP 301
>04_04_0176 - 23329589-23331043
Length = 484
Score = 26.2 bits (55), Expect = 8.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 347 GREGFGQTASKNTEEEGRIRWRQSQEEEVVQR 252
GR+GF + EE GR R R +EE +R
Sbjct: 405 GRDGFDLSRKHGHEERGRYRPRVLEEEREHER 436
>03_06_0766 -
36106116-36106230,36106598-36106716,36106880-36106960,
36107062-36107118,36107350-36107373,36107810-36107909,
36107983-36108053,36108132-36108236,36108674-36108847,
36109406-36109555,36109701-36109871,36109968-36110024,
36110107-36110142,36110165-36110357,36110439-36110578,
36110960-36111166,36111442-36111498,36111711-36111809,
36112289-36112408,36112865-36113032,36113450-36113510,
36113611-36113720,36114132-36114263,36114344-36114511,
36115118-36115182,36115242-36115372,36115450-36115487,
36116272-36116373,36116480-36116537,36117479-36117580,
36117695-36117909,36118158-36118307,36118699-36118858,
36118984-36119042,36119287-36119443,36119536-36119681,
36121376-36121648,36122889-36122891
Length = 1457
Score = 26.2 bits (55), Expect = 8.6
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -3
Query: 196 KLYKEVPQYKLITPAVVSERLKVRGSLARRALIELR 89
+ Y + YK + A+++ + RG +ARR L EL+
Sbjct: 770 RCYLVLSNYKRMMKAIITTQCAWRGRVARRELRELK 805
>02_05_0114 + 25958834-25961296
Length = 820
Score = 26.2 bits (55), Expect = 8.6
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 172 TVGLPCTVSHMWVYQTTPGCSTCHELFLWTTSSSWLCRHRILPS 303
T PC++S M V C TC+++ S +CR ++PS
Sbjct: 146 TCATPCSLSFM-VDCLIKACITCYDVQATICLFSGICRLGVVPS 188
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,925,905
Number of Sequences: 37544
Number of extensions: 225504
Number of successful extensions: 812
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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