Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13g04
(378 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M64716-1|AAA16105.1| 125|Homo sapiens ribosomal protein protein. 92 5e-19
BC004986-1|AAH04986.1| 125|Homo sapiens ribosomal protein S25 p... 92 5e-19
BC004294-1|AAH04294.1| 125|Homo sapiens ribosomal protein S25 p... 92 5e-19
BC003537-1|AAH03537.1| 125|Homo sapiens ribosomal protein S25 p... 92 5e-19
AB061844-1|BAB79482.1| 125|Homo sapiens ribosomal protein S25 p... 92 5e-19
BC028615-1|AAH28615.1| 408|Homo sapiens solute carrier family 3... 29 6.6
AK097034-1|BAC04932.1| 120|Homo sapiens protein ( Homo sapiens ... 29 6.6
Z95326-1|CAI20271.2| 408|Homo sapiens solute carrier family 35,... 28 8.8
BX640761-1|CAE45867.1| 228|Homo sapiens hypothetical protein pr... 28 8.8
BC114925-1|AAI14926.1| 408|Homo sapiens SLC35F1 protein protein. 28 8.8
AL449196-1|CAI16177.2| 408|Homo sapiens solute carrier family 3... 28 8.8
AL136478-1|CAM28261.1| 408|Homo sapiens solute carrier family 3... 28 8.8
AL133379-1|CAI19872.2| 408|Homo sapiens solute carrier family 3... 28 8.8
>M64716-1|AAA16105.1| 125|Homo sapiens ribosomal protein protein.
Length = 125
Score = 92.3 bits (219), Expect = 5e-19
Identities = 52/75 (69%), Positives = 55/75 (73%)
Frame = -3
Query: 235 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKXGSPT 56
LNN VLFDK TY+KL KEVP YKLITPAVVSERLK+RGSLAR AL EL KGLIK S
Sbjct: 44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKH 103
Query: 55 PWAGDLPARATKGDD 11
A + R TKG D
Sbjct: 104 R-AQVIYTRNTKGGD 117
>BC004986-1|AAH04986.1| 125|Homo sapiens ribosomal protein S25
protein.
Length = 125
Score = 92.3 bits (219), Expect = 5e-19
Identities = 52/75 (69%), Positives = 55/75 (73%)
Frame = -3
Query: 235 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKXGSPT 56
LNN VLFDK TY+KL KEVP YKLITPAVVSERLK+RGSLAR AL EL KGLIK S
Sbjct: 44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKH 103
Query: 55 PWAGDLPARATKGDD 11
A + R TKG D
Sbjct: 104 R-AQVIYTRNTKGGD 117
>BC004294-1|AAH04294.1| 125|Homo sapiens ribosomal protein S25
protein.
Length = 125
Score = 92.3 bits (219), Expect = 5e-19
Identities = 52/75 (69%), Positives = 55/75 (73%)
Frame = -3
Query: 235 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKXGSPT 56
LNN VLFDK TY+KL KEVP YKLITPAVVSERLK+RGSLAR AL EL KGLIK S
Sbjct: 44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKH 103
Query: 55 PWAGDLPARATKGDD 11
A + R TKG D
Sbjct: 104 R-AQVIYTRNTKGGD 117
>BC003537-1|AAH03537.1| 125|Homo sapiens ribosomal protein S25
protein.
Length = 125
Score = 92.3 bits (219), Expect = 5e-19
Identities = 52/75 (69%), Positives = 55/75 (73%)
Frame = -3
Query: 235 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKXGSPT 56
LNN VLFDK TY+KL KEVP YKLITPAVVSERLK+RGSLAR AL EL KGLIK S
Sbjct: 44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKH 103
Query: 55 PWAGDLPARATKGDD 11
A + R TKG D
Sbjct: 104 R-AQVIYTRNTKGGD 117
>AB061844-1|BAB79482.1| 125|Homo sapiens ribosomal protein S25
protein.
Length = 125
Score = 92.3 bits (219), Expect = 5e-19
Identities = 52/75 (69%), Positives = 55/75 (73%)
Frame = -3
Query: 235 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKXGSPT 56
LNN VLFDK TY+KL KEVP YKLITPAVVSERLK+RGSLAR AL EL KGLIK S
Sbjct: 44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKH 103
Query: 55 PWAGDLPARATKGDD 11
A + R TKG D
Sbjct: 104 R-AQVIYTRNTKGGD 117
>BC028615-1|AAH28615.1| 408|Homo sapiens solute carrier family 35,
member F1 protein.
Length = 408
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 93 SSMSALLAREPRT-FNLSDTTAGVISLYCGTSLYSFSYVGL 212
S M ++ + T NLS TA + SL+CG L+ + + GL
Sbjct: 298 SFMQVVIKKTSATSVNLSLLTADLYSLFCGLFLFHYKFSGL 338
>AK097034-1|BAC04932.1| 120|Homo sapiens protein ( Homo sapiens
cDNA FLJ39715 fis, clone SMINT2013228. ).
Length = 120
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = +1
Query: 175 VGLPCTVSHMWVYQTTPGCSTCH---ELFLWTTSSSWLCRHRILPSSSVFFEAVWPKPSR 345
+GL T +H W Y+ P CS C+ ++++ T H P S + V +P+
Sbjct: 20 LGLLHTHTHTWYYRCEPTCSACYTHTNIYIFKTEF-----HSYCPGWSAMRDLVSLQPAT 74
Query: 346 PSWAASL--NW 372
+ SL NW
Sbjct: 75 SASCLSLPSNW 85
>Z95326-1|CAI20271.2| 408|Homo sapiens solute carrier family 35,
member F1 protein.
Length = 408
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 135 NLSDTTAGVISLYCGTSLYSFSYVGL 212
NLS TA + SL+CG L+ + + GL
Sbjct: 313 NLSLLTADLYSLFCGLFLFHYKFSGL 338
>BX640761-1|CAE45867.1| 228|Homo sapiens hypothetical protein
protein.
Length = 228
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 135 NLSDTTAGVISLYCGTSLYSFSYVGL 212
NLS TA + SL+CG L+ + + GL
Sbjct: 133 NLSLLTADLYSLFCGLFLFHYKFSGL 158
>BC114925-1|AAI14926.1| 408|Homo sapiens SLC35F1 protein protein.
Length = 408
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 135 NLSDTTAGVISLYCGTSLYSFSYVGL 212
NLS TA + SL+CG L+ + + GL
Sbjct: 313 NLSLLTADLYSLFCGLFLFHYKFSGL 338
>AL449196-1|CAI16177.2| 408|Homo sapiens solute carrier family 35,
member F1 protein.
Length = 408
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 135 NLSDTTAGVISLYCGTSLYSFSYVGL 212
NLS TA + SL+CG L+ + + GL
Sbjct: 313 NLSLLTADLYSLFCGLFLFHYKFSGL 338
>AL136478-1|CAM28261.1| 408|Homo sapiens solute carrier family 35,
member F1 protein.
Length = 408
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 135 NLSDTTAGVISLYCGTSLYSFSYVGL 212
NLS TA + SL+CG L+ + + GL
Sbjct: 313 NLSLLTADLYSLFCGLFLFHYKFSGL 338
>AL133379-1|CAI19872.2| 408|Homo sapiens solute carrier family 35,
member F1 protein.
Length = 408
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 135 NLSDTTAGVISLYCGTSLYSFSYVGL 212
NLS TA + SL+CG L+ + + GL
Sbjct: 313 NLSLLTADLYSLFCGLFLFHYKFSGL 338
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,351,999
Number of Sequences: 237096
Number of extensions: 1362649
Number of successful extensions: 3220
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3219
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2536788584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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