Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13g04
(378 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY071076-1|AAL48698.1| 117|Drosophila melanogaster RE14595p pro... 126 7e-30
AE014297-1258|AAF54605.2| 117|Drosophila melanogaster CG6684-PB... 126 7e-30
AE014297-1257|AAN13495.1| 117|Drosophila melanogaster CG6684-PA... 126 7e-30
U03289-1|AAA03464.1| 113|Drosophila melanogaster protein ( Dros... 114 3e-26
BT021362-1|AAX33510.1| 1313|Drosophila melanogaster LP14331p pro... 27 6.1
AY052101-1|AAK93525.1| 607|Drosophila melanogaster SD04973p pro... 27 6.1
AE014134-2656|AAG22436.2| 379|Drosophila melanogaster CG4793-PB... 27 6.1
AE014134-2655|AAN10922.1| 1022|Drosophila melanogaster CG4793-PC... 27 6.1
AE013599-3005|AAF57474.1| 567|Drosophila melanogaster CG8929-PC... 27 6.1
AE013599-3004|AAF57475.2| 607|Drosophila melanogaster CG8929-PB... 27 6.1
AE013599-3003|AAF57473.2| 607|Drosophila melanogaster CG8929-PA... 27 6.1
AE013599-1857|AAF58271.3| 1313|Drosophila melanogaster CG8523-PA... 27 6.1
AY075574-1|AAL68379.1| 980|Drosophila melanogaster SD04405p pro... 27 8.0
AE014298-775|AAF46062.3| 980|Drosophila melanogaster CG3160-PA ... 27 8.0
>AY071076-1|AAL48698.1| 117|Drosophila melanogaster RE14595p
protein.
Length = 117
Score = 126 bits (305), Expect = 7e-30
Identities = 71/117 (60%), Positives = 78/117 (66%)
Frame = -3
Query: 361 MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXKLNNQVLFDKPTYEKLYKE 182
MPPKKDAK+SAKQPQ KLNNQVLFDK TYEKLYKE
Sbjct: 1 MPPKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKE 60
Query: 181 VPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKXGSPTPWAGDLPARATKGDD 11
VP YKLITP+VVSERLK+RGSLA+RALIELREKGLIK + + RATKGD+
Sbjct: 61 VPAYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQ-VVQHHSQVIYTRATKGDE 116
>AE014297-1258|AAF54605.2| 117|Drosophila melanogaster CG6684-PB,
isoform B protein.
Length = 117
Score = 126 bits (305), Expect = 7e-30
Identities = 71/117 (60%), Positives = 78/117 (66%)
Frame = -3
Query: 361 MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXKLNNQVLFDKPTYEKLYKE 182
MPPKKDAK+SAKQPQ KLNNQVLFDK TYEKLYKE
Sbjct: 1 MPPKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKE 60
Query: 181 VPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKXGSPTPWAGDLPARATKGDD 11
VP YKLITP+VVSERLK+RGSLA+RALIELREKGLIK + + RATKGD+
Sbjct: 61 VPAYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQ-VVQHHSQVIYTRATKGDE 116
>AE014297-1257|AAN13495.1| 117|Drosophila melanogaster CG6684-PA,
isoform A protein.
Length = 117
Score = 126 bits (305), Expect = 7e-30
Identities = 71/117 (60%), Positives = 78/117 (66%)
Frame = -3
Query: 361 MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXKLNNQVLFDKPTYEKLYKE 182
MPPKKDAK+SAKQPQ KLNNQVLFDK TYEKLYKE
Sbjct: 1 MPPKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKE 60
Query: 181 VPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKXGSPTPWAGDLPARATKGDD 11
VP YKLITP+VVSERLK+RGSLA+RALIELREKGLIK + + RATKGD+
Sbjct: 61 VPAYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQ-VVQHHSQVIYTRATKGDE 116
>U03289-1|AAA03464.1| 113|Drosophila melanogaster protein (
Drosophila melanogasterSevelin ribosomal protein homolog
gene, partial cds. ).
Length = 113
Score = 114 bits (275), Expect = 3e-26
Identities = 66/113 (58%), Positives = 73/113 (64%)
Frame = -3
Query: 349 KDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXKLNNQVLFDKPTYEKLYKEVPQY 170
KDAK+SAKQPQ KLNNQVLFDK TYEKLYKEVP Y
Sbjct: 1 KDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKEVPAY 60
Query: 169 KLITPAVVSERLKVRGSLARRALIELREKGLIKXGSPTPWAGDLPARATKGDD 11
KLITP+VVSERLK+RGSL +RALIELREKGLIK + + RATKGD+
Sbjct: 61 KLITPSVVSERLKIRGSLDKRALIELREKGLIKQ-VVQHHSQVIYTRATKGDE 112
>BT021362-1|AAX33510.1| 1313|Drosophila melanogaster LP14331p
protein.
Length = 1313
Score = 27.5 bits (58), Expect = 6.1
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 96 SMSALLAREPRTFNLSDTTAGVISLYCG-TSLYSFSYVGLS 215
++S LL + R F+L +T G+I L C S+ F+Y S
Sbjct: 134 AISTLLLDKVRQFSLQNTYIGIIMLVCSYLSITCFNYAAHS 174
>AY052101-1|AAK93525.1| 607|Drosophila melanogaster SD04973p
protein.
Length = 607
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 330 PNSLKKHRRRRKDPVAAKPRRRSGP 256
P+S + R R+ P++ PRRRS P
Sbjct: 128 PHSRSRSRLRKSPPLSPPPRRRSPP 152
>AE014134-2656|AAG22436.2| 379|Drosophila melanogaster CG4793-PB,
isoform B protein.
Length = 379
Score = 27.5 bits (58), Expect = 6.1
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 213 SNNTWLFNLSRTFPLDHFF-FLALPPPDPSF 302
+NN L L+R LDH + LPPP+ +F
Sbjct: 189 ANNAALLFLARPLKLDHHIGLICLPPPNRNF 219
>AE014134-2655|AAN10922.1| 1022|Drosophila melanogaster CG4793-PC,
isoform C protein.
Length = 1022
Score = 27.5 bits (58), Expect = 6.1
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 213 SNNTWLFNLSRTFPLDHFF-FLALPPPDPSF 302
+NN L L+R LDH + LPPP+ +F
Sbjct: 189 ANNAALLFLARPLKLDHHIGLICLPPPNRNF 219
>AE013599-3005|AAF57474.1| 567|Drosophila melanogaster CG8929-PC,
isoform C protein.
Length = 567
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 330 PNSLKKHRRRRKDPVAAKPRRRSGP 256
P+S + R R+ P++ PRRRS P
Sbjct: 88 PHSRSRSRLRKSPPLSPPPRRRSPP 112
>AE013599-3004|AAF57475.2| 607|Drosophila melanogaster CG8929-PB,
isoform B protein.
Length = 607
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 330 PNSLKKHRRRRKDPVAAKPRRRSGP 256
P+S + R R+ P++ PRRRS P
Sbjct: 128 PHSRSRSRLRKSPPLSPPPRRRSPP 152
>AE013599-3003|AAF57473.2| 607|Drosophila melanogaster CG8929-PA,
isoform A protein.
Length = 607
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 330 PNSLKKHRRRRKDPVAAKPRRRSGP 256
P+S + R R+ P++ PRRRS P
Sbjct: 128 PHSRSRSRLRKSPPLSPPPRRRSPP 152
>AE013599-1857|AAF58271.3| 1313|Drosophila melanogaster CG8523-PA
protein.
Length = 1313
Score = 27.5 bits (58), Expect = 6.1
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 96 SMSALLAREPRTFNLSDTTAGVISLYCG-TSLYSFSYVGLS 215
++S LL + R F+L +T G+I L C S+ F+Y S
Sbjct: 134 AISTLLLDKVRQFSLQNTYIGIIMLVCSYLSITCFNYAAHS 174
>AY075574-1|AAL68379.1| 980|Drosophila melanogaster SD04405p protein.
Length = 980
Score = 27.1 bits (57), Expect = 8.0
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 11/67 (16%)
Frame = +3
Query: 39 RSPAHGVGLPX-LMRP--FSLSSMSALLA-REPRT----FNLSDT---TAGVISLYCGTS 185
RS HG+ LP + P L+S+S LL R P+ + LS AGV+ LYC +
Sbjct: 890 RSRRHGINLPDPSLYPSIVVLASLSLLLQLRAPQKCQGYWMLSIAFYILAGVVLLYCQAA 949
Query: 186 LYSFSYV 206
+Y +YV
Sbjct: 950 IYRLTYV 956
>AE014298-775|AAF46062.3| 980|Drosophila melanogaster CG3160-PA
protein.
Length = 980
Score = 27.1 bits (57), Expect = 8.0
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 11/67 (16%)
Frame = +3
Query: 39 RSPAHGVGLPX-LMRP--FSLSSMSALLA-REPRT----FNLSDT---TAGVISLYCGTS 185
RS HG+ LP + P L+S+S LL R P+ + LS AGV+ LYC +
Sbjct: 890 RSRRHGINLPDPSLYPSIVVLASLSLLLQLRAPQKCQGYWMLSIAFYILAGVVLLYCQAA 949
Query: 186 LYSFSYV 206
+Y +YV
Sbjct: 950 IYRLTYV 956
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,674,412
Number of Sequences: 53049
Number of extensions: 357792
Number of successful extensions: 1102
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1003372560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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