Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13g03
         (155 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi...    23   5.4  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    23   7.2  
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    22   9.5  
SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces pomb...    22   9.5  

>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
           Sec14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 286

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 1   EKVPFRNISXEIGFNCNGIXGC 66
           E++P  N+  ++G NC    GC
Sbjct: 248 EQIPADNLPAKLGGNCQCPGGC 269


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 129  WRWYLASRTHKTSYHQLSAVTTTXNTITIKP 37
            WR++L  +   T     + V T  N ITI P
Sbjct: 2487 WRFHLLRQLQHTKGLGRNRVATRQNIITITP 2517


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 111 SRTHKTSYHQLSAVTTTXNTITIKPYF 31
           S  +  SYH  S+V +  +T+T+   F
Sbjct: 509 STPYHISYHAFSSVLSKSSTLTVGDIF 535


>SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 405

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 123 WYLASRTHKTSYHQLSAVTTTXNTITIKPYFP*YV 19
           W++ S T KTS  +L +  +    I + P+   YV
Sbjct: 87  WFMNSLTPKTSILELGSGISGLAGILLSPFVGNYV 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 412,336
Number of Sequences: 5004
Number of extensions: 4422
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 2,362,478
effective HSP length: 32
effective length of database: 2,202,350
effective search space used: 41844650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)