Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13g03
         (155 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               19   5.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    19   5.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   7.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   7.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    18   9.8  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 81  LSAVTTTXNTITIKPY 34
           L + TTT  T T+ PY
Sbjct: 453 LESGTTTLQTRTMHPY 468


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -2

Query: 76  CGNNNX*YHYN 44
           CG+    YHYN
Sbjct: 190 CGDRASGYHYN 200


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 112 LADSQDVLPPVKCGNN 65
           +AD + V+PPV   N+
Sbjct: 229 IADHRGVMPPVILENS 244


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 112 LADSQDVLPPVKCGNN 65
           +AD + V+PPV   N+
Sbjct: 229 IADHRGVMPPVILENS 244


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +3

Query: 72  PHLTGGKT 95
           PH+ GG+T
Sbjct: 341 PHMLGGRT 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,261
Number of Sequences: 438
Number of extensions: 456
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 31
effective length of database: 132,765
effective search space used:  2655300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)