Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13g02
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    30   0.33 
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    27   4.0  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    26   7.0  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    26   7.0  
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc...    26   7.0  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    25   9.3  

>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = -3

Query: 268 QDAVYCVPWEYMDTSHRKMVYMMFRQSQIPLQLKAMNMLSIGVKTMASILKTSVTYYLML 89
           Q  ++C   EYMD  H   V  +  +S IPL  +A+   +I +  +A   K S    L L
Sbjct: 255 QADLFCEWQEYMDGLHNFPVQGVAAESVIPLNDRALRKTAIAMNLVAHHCKDSTLLGLFL 314

Query: 88  KT 83
           ++
Sbjct: 315 ES 316


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = -3

Query: 286 YMNDKLQDAVYCVPWEYMDTSHRKMVYMMFRQSQIPLQLKAMNMLS 149
           +MN  LQ  +YCVP+  +     +MV   F ++  PL ++++ MLS
Sbjct: 143 FMNSILQALMYCVPFYNLLKQINRMVPYNFERT-TPL-IESLTMLS 186


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +2

Query: 131 HSFDAYAQHVHSLQLQWYLRLSEHHVHHLPVTCVHVLPRHAVH 259
           HS  +  + V       +  L++ H+ H+  +C+ V  RH +H
Sbjct: 799 HSGFSVGERVFISDEHGHWSLAKGHIVHIQDSCIEVRTRHRLH 841


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 676 CTSLFILFDLLLSMMIIHLWGHIRIFIHNLNHI 578
           C+++F+LFD      I+ L   I+ F+H L  I
Sbjct: 520 CSTVFMLFDGATPSEIVALEQDIKFFLHVLTKI 552


>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 465

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = -3

Query: 607 RIFIHNLNHIPAPRNSLEYTREERQEVDNTLKKCIQHHTLIIGFVRIMSETYGL 446
           R FIHNLN      +S E+         N  +   Q +  + G VR   +  GL
Sbjct: 328 RGFIHNLNFKAKNYSSKEWALVSSASFVNVAQDYSQQNNCLFGVVRSPKDNQGL 381


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 336 IVVKNPNRVIVFKSSREHCNS 398
           I+VKN N VIVF  S+  C +
Sbjct: 449 IMVKNYNPVIVFSFSKRECEA 469


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,292,092
Number of Sequences: 5004
Number of extensions: 71341
Number of successful extensions: 198
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)