Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13g02
(783 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 29 4.2
10_02_0112 + 5385660-5385821,5386337-5386876 28 7.3
04_04_1695 + 35433975-35437040 28 7.3
03_06_0284 + 32836171-32836377,32836466-32836568,32836681-328367... 28 7.3
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 28 9.6
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342... 28 9.6
04_01_0367 + 4834602-4835489,4836117-4836644 28 9.6
02_02_0730 - 13466806-13466865,13466922-13467029,13467897-134679... 28 9.6
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -2
Query: 638 HDDNTLVGSYPDLYPQFEPHTGAS*LLGVHKRRETRSG*YAEEVHSTPHFN-NRICSHNV 462
+DDN+++G +PD + + G + LL KR++T A++ P N++ N+
Sbjct: 40 NDDNSVIGMHPDTMEKLQLFRGDTVLLKGKKRKDTICIVLADDTCEEPKIRMNKVVRKNL 99
>10_02_0112 + 5385660-5385821,5386337-5386876
Length = 233
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 168 FNCNGICDCLNIMYTIFL*LVSMYSH 245
F CNG+C CL+ + + L+S SH
Sbjct: 36 FQCNGVCMCLSTLRYLSSSLLSRVSH 61
>04_04_1695 + 35433975-35437040
Length = 1021
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 503 NALLQRI-IHFLSLFSCVLQGVTRRRYVVQIVDKDPDMTPQVYYHHGQ 643
+ALLQR + LFS V + R Y++ DP P V++H Q
Sbjct: 105 DALLQRYPLEKRGLFSRVSGDIALRLYLIANDSPDPPPAPAVHHHQHQ 152
>03_06_0284 +
32836171-32836377,32836466-32836568,32836681-32836757,
32836846-32837037,32837144-32837263,32837350-32837412,
32837537-32837671,32837827-32837991,32838104-32838181,
32840303-32840389,32840548-32840619,32840925-32840951,
32842292-32842390,32843143-32843213,32843710-32843838,
32843936-32844012,32844186-32844226,32844319-32844393,
32844525-32844673,32844766-32844870,32844948-32845023,
32845465-32845541,32845761-32846529
Length = 997
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +2
Query: 89 QHKVVRYRRLQYRGHSFDAYAQH-VHSLQLQW-YLRLSEHHVHHLPVTCVHVLPRHAVHC 262
+HK++ Y RLQ FD +H ++ L L L+ H VH + V +P C
Sbjct: 206 EHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLSLATHEVHFSILREVITMPGQHEKC 265
Query: 263 IL 268
L
Sbjct: 266 FL 267
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -2
Query: 638 HDDNTLVGSYPDLYPQFEPHTGAS*LLGVHKRRETRSG*YAEEVHSTPHFN-NRICSHNV 462
+DDN++V +PD + + G + LL KR++T A+E P N++ N+
Sbjct: 40 NDDNSVVALHPDTMERLQLFRGDTVLLKGKKRKDTICIVLADETCEEPKIRMNKVVRKNL 99
>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
26834330-26834732,26834840-26835118,26835285-26835716,
26836362-26836838,26837171-26837212,26837285-26837545,
26837637-26838938,26839146-26839575,26839643-26840046,
26840360-26840716,26840842-26841102,26841494-26842141,
26842231-26842452,26842547-26842768,26842860-26843009,
26843739-26844111,26844467-26844689,26845167-26845425,
26845585-26845920,26846013-26846999,26848395-26849624,
26849706-26849768,26849858-26849910,26849998-26850079,
26850520-26850588,26851070-26851129,26851205-26851267,
26851993-26852101,26852742-26852827,26853120-26853847,
26854613-26854676
Length = 3716
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -2
Query: 257 VLRAVGVHGHKSQEDGVHDVQTVADTIAVEGYEHVEHRRQNY 132
VL+ + +H +K QE+ H + V + + EHRRQ++
Sbjct: 1090 VLKRLPMHANKEQEETNHVLTQVLRVVNNADEANSEHRRQSF 1131
>04_01_0367 + 4834602-4835489,4836117-4836644
Length = 471
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = -3
Query: 589 LNHIPAPRNSLEYTREERQEVDNTLKKCIQHHTLIIGFVRIMSET 455
LN + P N++E+ E +KK + +++G R++ E+
Sbjct: 300 LNSVDNPSNAVEWALAEMVNNPKVMKKAVDELDMVVGKERLVEES 344
>02_02_0730 -
13466806-13466865,13466922-13467029,13467897-13467910,
13468234-13468389,13468474-13468599,13468660-13468842,
13469103-13469198,13469290-13469338
Length = 263
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +2
Query: 407 SNHLLESVIDEDRQTVRLRHYANKSYY*SVVLNALLQ--RIIHFLSLFSCVLQGVTRRRY 580
SNH L +D +H V+N + Q + H S FSC+LQG T+ +
Sbjct: 138 SNHALLQPVDRTGPGSDQQHMITPRCLPFTVINNVAQYDNVDHTGSPFSCILQGATQNSH 197
Query: 581 VV 586
+
Sbjct: 198 TL 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,043,022
Number of Sequences: 37544
Number of extensions: 451906
Number of successful extensions: 1116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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