Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13g02
(783 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK126754-1|BAC86675.1| 130|Homo sapiens protein ( Homo sapiens ... 31 4.7
BC004258-1|AAH04258.2| 649|Homo sapiens WW domain containing ad... 31 6.2
AL358234-3|CAH70768.1| 602|Homo sapiens WW domain containing ad... 31 6.2
AL358234-1|CAH70766.1| 647|Homo sapiens WW domain containing ad... 31 6.2
AL161936-4|CAI40924.1| 602|Homo sapiens WW domain containing ad... 31 6.2
AL161936-2|CAI40922.1| 647|Homo sapiens WW domain containing ad... 31 6.2
AL161936-1|CAI40921.1| 389|Homo sapiens WW domain containing ad... 31 6.2
AK223600-1|BAD97320.1| 647|Homo sapiens WW domain-containing ad... 31 6.2
BC022429-1|AAH22429.1| 40|Homo sapiens LYRM7 protein protein. 25 8.0
AK123631-1|BAC85667.1| 207|Homo sapiens protein ( Homo sapiens ... 25 8.5
>AK126754-1|BAC86675.1| 130|Homo sapiens protein ( Homo sapiens
cDNA FLJ44801 fis, clone BRACE3041827. ).
Length = 130
Score = 31.1 bits (67), Expect = 4.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 112 SVTYYLMLKTITANEA*EQQKHIVHTHTHTH 20
SV YL K+ ++ +Q+ + HTHTHTH
Sbjct: 9 SVGEYLDCKSSLPQKSEQQENTLTHTHTHTH 39
>BC004258-1|AAH04258.2| 649|Homo sapiens WW domain containing
adaptor with coiled-coil protein.
Length = 649
Score = 30.7 bits (66), Expect = 6.2
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 1/142 (0%)
Frame = +1
Query: 154 TCS*PSTAMVSATV*TSCTPSSCDLCPCTPTARSTLHLGAYHSYTLEAQI*PIFELIVDL 333
+C+ PST+ S TS P+S P +P +S + L Q+ P + + L
Sbjct: 318 SCTTPSTSSASGLNPTSAPPTSASAVPVSPVPQSPIP-PLLQDPNLLRQLLPALQATLQL 376
Query: 334 P**SKIQIA**FSNPVVNIA-TATSIQPLAGKRNR*GPPDRTSQTLCEQILLLKCGVECT 510
S + I+ N V+ A T S+Q + K GP +L Q L +
Sbjct: 377 N-NSNVDIS--KINEVLTAAVTQASLQSIIHKFLTAGPSAFNITSLISQAAQL--STQAQ 431
Query: 511 SSAYYPLLVSLLLCTPRSYEAP 576
S P+ ++ +PRSY +P
Sbjct: 432 PSNQSPMSLTSDASSPRSYVSP 453
>AL358234-3|CAH70768.1| 602|Homo sapiens WW domain containing
adaptor with coiled-coil protein.
Length = 602
Score = 30.7 bits (66), Expect = 6.2
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 1/142 (0%)
Frame = +1
Query: 154 TCS*PSTAMVSATV*TSCTPSSCDLCPCTPTARSTLHLGAYHSYTLEAQI*PIFELIVDL 333
+C+ PST+ S TS P+S P +P +S + L Q+ P + + L
Sbjct: 273 SCTTPSTSSASGLNPTSAPPTSASAVPVSPVPQSPIP-PLLQDPNLLRQLLPALQATLQL 331
Query: 334 P**SKIQIA**FSNPVVNIA-TATSIQPLAGKRNR*GPPDRTSQTLCEQILLLKCGVECT 510
S + I+ N V+ A T S+Q + K GP +L Q L +
Sbjct: 332 N-NSNVDIS--KINEVLTAAVTQASLQSIIHKFLTAGPSAFNITSLISQAAQL--STQAQ 386
Query: 511 SSAYYPLLVSLLLCTPRSYEAP 576
S P+ ++ +PRSY +P
Sbjct: 387 PSNQSPMSLTSDASSPRSYVSP 408
>AL358234-1|CAH70766.1| 647|Homo sapiens WW domain containing
adaptor with coiled-coil protein.
Length = 647
Score = 30.7 bits (66), Expect = 6.2
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 1/142 (0%)
Frame = +1
Query: 154 TCS*PSTAMVSATV*TSCTPSSCDLCPCTPTARSTLHLGAYHSYTLEAQI*PIFELIVDL 333
+C+ PST+ S TS P+S P +P +S + L Q+ P + + L
Sbjct: 318 SCTTPSTSSASGLNPTSAPPTSASAVPVSPVPQSPIP-PLLQDPNLLRQLLPALQATLQL 376
Query: 334 P**SKIQIA**FSNPVVNIA-TATSIQPLAGKRNR*GPPDRTSQTLCEQILLLKCGVECT 510
S + I+ N V+ A T S+Q + K GP +L Q L +
Sbjct: 377 N-NSNVDIS--KINEVLTAAVTQASLQSIIHKFLTAGPSAFNITSLISQAAQL--STQAQ 431
Query: 511 SSAYYPLLVSLLLCTPRSYEAP 576
S P+ ++ +PRSY +P
Sbjct: 432 PSNQSPMSLTSDASSPRSYVSP 453
>AL161936-4|CAI40924.1| 602|Homo sapiens WW domain containing
adaptor with coiled-coil protein.
Length = 602
Score = 30.7 bits (66), Expect = 6.2
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 1/142 (0%)
Frame = +1
Query: 154 TCS*PSTAMVSATV*TSCTPSSCDLCPCTPTARSTLHLGAYHSYTLEAQI*PIFELIVDL 333
+C+ PST+ S TS P+S P +P +S + L Q+ P + + L
Sbjct: 273 SCTTPSTSSASGLNPTSAPPTSASAVPVSPVPQSPIP-PLLQDPNLLRQLLPALQATLQL 331
Query: 334 P**SKIQIA**FSNPVVNIA-TATSIQPLAGKRNR*GPPDRTSQTLCEQILLLKCGVECT 510
S + I+ N V+ A T S+Q + K GP +L Q L +
Sbjct: 332 N-NSNVDIS--KINEVLTAAVTQASLQSIIHKFLTAGPSAFNITSLISQAAQL--STQAQ 386
Query: 511 SSAYYPLLVSLLLCTPRSYEAP 576
S P+ ++ +PRSY +P
Sbjct: 387 PSNQSPMSLTSDASSPRSYVSP 408
>AL161936-2|CAI40922.1| 647|Homo sapiens WW domain containing
adaptor with coiled-coil protein.
Length = 647
Score = 30.7 bits (66), Expect = 6.2
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 1/142 (0%)
Frame = +1
Query: 154 TCS*PSTAMVSATV*TSCTPSSCDLCPCTPTARSTLHLGAYHSYTLEAQI*PIFELIVDL 333
+C+ PST+ S TS P+S P +P +S + L Q+ P + + L
Sbjct: 318 SCTTPSTSSASGLNPTSAPPTSASAVPVSPVPQSPIP-PLLQDPNLLRQLLPALQATLQL 376
Query: 334 P**SKIQIA**FSNPVVNIA-TATSIQPLAGKRNR*GPPDRTSQTLCEQILLLKCGVECT 510
S + I+ N V+ A T S+Q + K GP +L Q L +
Sbjct: 377 N-NSNVDIS--KINEVLTAAVTQASLQSIIHKFLTAGPSAFNITSLISQAAQL--STQAQ 431
Query: 511 SSAYYPLLVSLLLCTPRSYEAP 576
S P+ ++ +PRSY +P
Sbjct: 432 PSNQSPMSLTSDASSPRSYVSP 453
>AL161936-1|CAI40921.1| 389|Homo sapiens WW domain containing
adaptor with coiled-coil protein.
Length = 389
Score = 30.7 bits (66), Expect = 6.2
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 1/142 (0%)
Frame = +1
Query: 154 TCS*PSTAMVSATV*TSCTPSSCDLCPCTPTARSTLHLGAYHSYTLEAQI*PIFELIVDL 333
+C+ PST+ S TS P+S P +P +S + L Q+ P + + L
Sbjct: 60 SCTTPSTSSASGLNPTSAPPTSASAVPVSPVPQSPIP-PLLQDPNLLRQLLPALQATLQL 118
Query: 334 P**SKIQIA**FSNPVVNIA-TATSIQPLAGKRNR*GPPDRTSQTLCEQILLLKCGVECT 510
S + I+ N V+ A T S+Q + K GP +L Q L +
Sbjct: 119 N-NSNVDIS--KINEVLTAAVTQASLQSIIHKFLTAGPSAFNITSLISQAAQL--STQAQ 173
Query: 511 SSAYYPLLVSLLLCTPRSYEAP 576
S P+ ++ +PRSY +P
Sbjct: 174 PSNQSPMSLTSDASSPRSYVSP 195
>AK223600-1|BAD97320.1| 647|Homo sapiens WW domain-containing
adapter with a coiled-coil region isoform 1 variant
protein.
Length = 647
Score = 30.7 bits (66), Expect = 6.2
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 1/142 (0%)
Frame = +1
Query: 154 TCS*PSTAMVSATV*TSCTPSSCDLCPCTPTARSTLHLGAYHSYTLEAQI*PIFELIVDL 333
+C+ PST+ S TS P+S P +P +S + L Q+ P + + L
Sbjct: 318 SCTTPSTSSASGLNPTSAPPTSASAVPVSPVPQSPIP-PLLQDPNLLRQLLPALQATLQL 376
Query: 334 P**SKIQIA**FSNPVVNIA-TATSIQPLAGKRNR*GPPDRTSQTLCEQILLLKCGVECT 510
S + I+ N V+ A T S+Q + K GP +L Q L +
Sbjct: 377 N-NSNVDIS--KINEVLTAAVTQASLQSIIHKFLTAGPSAFNITSLISQAAQL--STQAQ 431
Query: 511 SSAYYPLLVSLLLCTPRSYEAP 576
S P+ ++ +PRSY +P
Sbjct: 432 PSNQSPMSLTSDASSPRSYVSP 453
>BC022429-1|AAH22429.1| 40|Homo sapiens LYRM7 protein protein.
Length = 40
Score = 25.0 bits (52), Expect(2) = 8.0
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -3
Query: 40 HTHTHTHNL 14
HTHTHTH+L
Sbjct: 12 HTHTHTHSL 20
Score = 24.2 bits (50), Expect(2) = 8.0
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = -3
Query: 43 VHTHTHTH 20
+HTHTHTH
Sbjct: 3 IHTHTHTH 10
>AK123631-1|BAC85667.1| 207|Homo sapiens protein ( Homo sapiens
cDNA FLJ41637 fis, clone FEBRA1000030, weakly similar
to T-CELL RECEPTOR BETA CHAIN ANA 11. ).
Length = 207
Score = 24.6 bits (51), Expect(2) = 8.5
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3
Query: 40 HTHTHTHNL 14
HTHTHTH L
Sbjct: 111 HTHTHTHTL 119
Score = 24.2 bits (50), Expect(2) = 8.5
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = -3
Query: 43 VHTHTHTH 20
+HTHTHTH
Sbjct: 75 IHTHTHTH 82
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,281,498
Number of Sequences: 237096
Number of extensions: 2581939
Number of successful extensions: 13991
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13944
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9534535578
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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