Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13g02
         (783 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z97190-1|CAB10024.1| 1111|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical pr...    29   5.0  
U49940-1|AAA93411.2|  435|Caenorhabditis elegans Hypothetical pr...    29   5.0  
U39996-6|AAA81092.1|  595|Caenorhabditis elegans Hypothetical pr...    29   5.0  
U12964-3|AAA91222.2| 1032|Caenorhabditis elegans Nhl (ring finge...    28   6.6  
AF067216-8|AAN84852.1|  954|Caenorhabditis elegans Hypothetical ...    28   6.6  
AF067216-7|AAC17521.1| 1262|Caenorhabditis elegans Hypothetical ...    28   6.6  

>Z97190-1|CAB10024.1| 1111|Caenorhabditis elegans Hypothetical
           protein H05G16.1 protein.
          Length = 1111

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 568 RNSLEYTREERQEVDNTLKKCIQHH 494
           + ++E++ E R E  N  KKC++HH
Sbjct: 298 KETVEFSFETRDECKNFWKKCVEHH 322


>U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical
           protein B0432.7 protein.
          Length = 621

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/27 (40%), Positives = 21/27 (77%)
 Frame = -3

Query: 331 NQQLIQISVIFELLGYMNDKLQDAVYC 251
           N ++I +S +  L+GY+++K++D VYC
Sbjct: 234 NARIIVVSSLV-LIGYLDEKVRDMVYC 259


>U49940-1|AAA93411.2|  435|Caenorhabditis elegans Hypothetical
           protein T24D11.1 protein.
          Length = 435

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -3

Query: 52  KHIVHTHTHTHNLY 11
           K ++HTHTHTH L+
Sbjct: 420 KMLIHTHTHTHTLH 433


>U39996-6|AAA81092.1|  595|Caenorhabditis elegans Hypothetical
           protein C56E6.5 protein.
          Length = 595

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 8/24 (33%), Positives = 20/24 (83%)
 Frame = -3

Query: 334 VNQQLIQISVIFELLGYMNDKLQD 263
           ++ ++ ++S +F+++GY +DKL+D
Sbjct: 131 IDHRISELSAMFDVIGYAHDKLED 154


>U12964-3|AAA91222.2| 1032|Caenorhabditis elegans Nhl (ring finger
           b-box coiled coil)domain containing protein 2 protein.
          Length = 1032

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +2

Query: 80  NGFQHKVVRYRRLQYRGHSFDAYAQHVHSLQLQWYL---RLSEHHVHHLPVTCV 232
           NG +  V R + +Q  G+   A   H H ++L++Y    +  +H VH L  T +
Sbjct: 385 NGLELVVSRKKVIQQFGNLSHAIPSHGHQVELEFYTPSKKQIDHFVHQLTGTVI 438


>AF067216-8|AAN84852.1|  954|Caenorhabditis elegans Hypothetical
           protein C35E7.5b protein.
          Length = 954

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = -2

Query: 293 SRVYE**APRCSVLRAVGVHGHKSQEDGVHDVQTVADTIAVEGYEHVEHRRQ 138
           SR YE  AP    L+ + VH    Q +G   +QTV D + V G   VE  ++
Sbjct: 459 SRKYEAMAP----LKVMNVHVPVPQSNGWRKIQTVEDVLNVYGKYQVEANKK 506


>AF067216-7|AAC17521.1| 1262|Caenorhabditis elegans Hypothetical
           protein C35E7.5a protein.
          Length = 1262

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = -2

Query: 293 SRVYE**APRCSVLRAVGVHGHKSQEDGVHDVQTVADTIAVEGYEHVEHRRQ 138
           SR YE  AP    L+ + VH    Q +G   +QTV D + V G   VE  ++
Sbjct: 459 SRKYEAMAP----LKVMNVHVPVPQSNGWRKIQTVEDVLNVYGKYQVEANKK 506


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,322,164
Number of Sequences: 27780
Number of extensions: 402388
Number of successful extensions: 1194
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)