Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13g01
(773 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 289 2e-78
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 287 9e-78
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 286 1e-77
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439... 29 4.1
06_03_0290 - 19193707-19193752,19193822-19194090 28 7.2
04_03_0983 + 21423086-21423280,21423330-21423404,21423531-214236... 28 9.5
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397... 28 9.5
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 289 bits (708), Expect = 2e-78
Identities = 134/213 (62%), Positives = 173/213 (81%)
Frame = -1
Query: 680 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 501
DPF +KDWYD+KAPS+F+ R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D +
Sbjct: 22 DPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED--Q 79
Query: 500 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 321
++RK RL AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTDGY+LR+FC
Sbjct: 80 AYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFC 139
Query: 320 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEK 141
IGFT + ++TCYAQ +Q+R IR+KM EI+ ++ +L+E+V+K IP+ I K+IEK
Sbjct: 140 IGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEK 199
Query: 140 ACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 42
A I+PL++V +RKVK+LK P+F++ KLME+H
Sbjct: 200 ATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVH 232
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 287 bits (703), Expect = 9e-78
Identities = 134/213 (62%), Positives = 172/213 (80%)
Frame = -1
Query: 680 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 501
DPF +KDWYD+KAPS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D +
Sbjct: 22 DPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED--Q 79
Query: 500 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 321
++RK RL AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+FC
Sbjct: 80 AYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFC 139
Query: 320 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEK 141
IGFT + ++TCYAQ +Q+R IR+KM EI+ ++ +L+E+V+K IP+ I K+IEK
Sbjct: 140 IGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEK 199
Query: 140 ACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 42
A I+PL++V +RKVK+LK P+F++ KLME+H
Sbjct: 200 ATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVH 232
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 286 bits (702), Expect = 1e-77
Identities = 134/213 (62%), Positives = 172/213 (80%)
Frame = -1
Query: 680 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 501
DPF++KDWYD+KAP++FS R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D +
Sbjct: 22 DPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED--Q 79
Query: 500 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 321
++RK RL AE VQGRNVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+FC
Sbjct: 80 AYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFC 139
Query: 320 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEK 141
IGFT + ++TCYAQ +Q+R IR+KM EI+ + +L+E+V+K IP+ I K+IEK
Sbjct: 140 IGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEK 199
Query: 140 ACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 42
+ I+PL++V IRKVK+LK P+F++ KLME+H
Sbjct: 200 STSSIFPLQNVFIRKVKILKAPKFDLGKLMEVH 232
>11_01_0558 -
4396750-4396986,4397699-4398050,4398266-4398504,
4398608-4398709
Length = 309
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 191 EVVNKLIPDSIAKDIEKACHGIYPLRD 111
++VN IPD + + ++K C IY LR+
Sbjct: 34 QLVNTGIPDDLLERVKKVCSDIYKLRE 60
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 448 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 359
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>04_03_0983 +
21423086-21423280,21423330-21423404,21423531-21423632,
21423721-21423774,21423880-21423972,21424526-21424618,
21427329-21427433,21427517-21427615,21427701-21427997,
21428512-21428622
Length = 407
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 406 LSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARETSK 549
+++ +R+ PW L++ R T +A + +KD SA + +S E K
Sbjct: 274 ITIREIRNHPWFLKNLPRELTEAAQAMYYKKDNSAPTYSVQSVEEIMK 321
>03_05_0791 +
27736978-27737217,27737648-27739191,27739512-27739763,
27739844-27739954,27740042-27740102,27740373-27740558
Length = 797
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 540 NFENSSLQSFRSNFRSLGTVDKRGADLPLAE 632
+FENS LQSF +L + K+G P E
Sbjct: 216 SFENSELQSFTDKIENLSSSQKKGYFKPKRE 246
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,013,681
Number of Sequences: 37544
Number of extensions: 458811
Number of successful extensions: 1379
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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