Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13f23
         (324 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              36   2e-04
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    28   0.025
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    20   6.5  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    20   6.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    20   8.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 35.5 bits (78), Expect = 2e-04
 Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +1

Query: 19  FDRDDNGYITRDELQ--AALEMIGEPVTDAQLNQVLALGDIDHDGRIDYEGLFFIYSFLI 192
           +DR++NG + R+EL+  A  E + E      L  +++  D D DG+++    +  +S L 
Sbjct: 245 YDRNNNGNLEREELEQFAENEDLEELCRGCNLGHMISYDDTDGDGKLNVNEFYMAFSKLY 304

Query: 193 IVSL 204
            VS+
Sbjct: 305 SVSV 308


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 28.3 bits (60), Expect = 0.025
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +1

Query: 157 YEGLFFIYSFLIIVSLYI 210
           + GLF ++SFLI+VS YI
Sbjct: 62  FSGLFSVFSFLILVSSYI 79


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 166 LFFIYSFLIIVSLYI 210
           LFF+    II+ LYI
Sbjct: 228 LFFVLPMTIIIVLYI 242


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 225 FNIKWKVNIFQILLS 269
           FN +WK  +F + LS
Sbjct: 231 FNFQWKDGLFGLSLS 245


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +1

Query: 25  RDDNGYITRDELQAALEMIGEPVTDAQLNQVLAL 126
           RDD G   +   +    ++ E   DA+  Q L L
Sbjct: 33  RDDGGKSRQSSFEVTSLLMREETEDAEDTQTLNL 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,580
Number of Sequences: 438
Number of extensions: 1409
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7093251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)