Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13f21
(452 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit Nse4|Sc... 27 1.0
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 27 1.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 3.1
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 25 4.1
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 25 5.4
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 25 5.4
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 25 7.2
SPAPJ760.03c |adg1||sequence orphan|Schizosaccharomyces pombe|ch... 25 7.2
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S... 25 7.2
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 25 7.2
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe... 24 9.5
>SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit
Nse4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 27.5 bits (58), Expect = 1.0
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +2
Query: 11 ALHYLCAPWTTAKKRRALQCSLRYSRAHSCSTSRLLLHGSRAYLRTANTSLNNKHLSR 184
+L+ + P + KK R +Q R +A + T +L+ + NT+ N H+SR
Sbjct: 131 SLNLMVGPLSFRKKERNIQRRERLQKAPNVLTQPTMLNERNITTQENNTTKNVLHISR 188
>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 175
Score = 27.5 bits (58), Expect = 1.0
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 445 LKFTKTHQHVTKFNQTFFYFIFLLYLSCC*YRN 347
+KF K ++V + NQ +F+F+ +LS C RN
Sbjct: 145 IKFNKLAKYVYEGNQ---FFLFIFFLSICQIRN 174
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 3.1
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +3
Query: 39 PQPRSAEPSSAASDTAVPTAVVRAGYSSTVAVHISAPPTRV*TISTSRVHA 191
P P S PS + ++VP+ A S T + SA P R ++S S+ A
Sbjct: 1240 PAPSSEAPSVSTPRSSVPSPHSNASPSPTSSSMASAAPART-SVSRSKSKA 1289
>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 25.4 bits (53), Expect = 4.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 122 HGSRAYLRTANTSLNNKHLSRARNRDQLDRSNPFYRPGDRT 244
HG R R+A L ++H+ + R LD RP D T
Sbjct: 154 HGER---RSAMDGLRDRHIRKVRVSQLLDLQRRRIRPADHT 191
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.0 bits (52), Expect = 5.4
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = -1
Query: 215 CCGQVGPCCVHARGAYCSNSCW 150
CC Q G V+ G+ + CW
Sbjct: 1164 CCYQFGAVFVNGEGSMVNKECW 1185
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 25.0 bits (52), Expect = 5.4
Identities = 14/44 (31%), Positives = 17/44 (38%)
Frame = -1
Query: 296 DMPVRNCCLGCQGPMSGPCGPLAYRMDCCGQVGPCCVHARGAYC 165
D P + C C+ P G C D C V C H A+C
Sbjct: 17 DTPKDDVCGICRVPFDGCCPQCTSPGDNCPIVWGKCKHIFHAHC 60
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 24.6 bits (51), Expect = 7.2
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -1
Query: 257 PMSGPCGPLAYRMDCCGQVGPCCVHARGAY 168
P G CG + Y C VG C+++ Y
Sbjct: 28 PRYGTCGGIYYDGPTCCVVGSSCIYSNPWY 57
>SPAPJ760.03c |adg1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 166
Score = 24.6 bits (51), Expect = 7.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 51 SAEPSSAASDTAVPTAVVRAGYSSTVAVHISAPP 152
S P+SA + T V +A + YS+++ V PP
Sbjct: 89 SVSPTSATTTTPVASATDVSVYSASIHVPTGNPP 122
>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
Spo6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 24.6 bits (51), Expect = 7.2
Identities = 8/24 (33%), Positives = 12/24 (50%)
Frame = -1
Query: 188 VHARGAYCSNSCWRCGDMHGYRGG 117
+ + YC N C R D+ + GG
Sbjct: 421 IETKSGYCENCCERYKDLERHLGG 444
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 24.6 bits (51), Expect = 7.2
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +3
Query: 39 PQPRSAEPSSAASDTAVPTAVVRAGYSSTVAVHI 140
PQP S+ S AVP A Y ST +V +
Sbjct: 56 PQPPSSSSPSTTGTVAVPINGANAVYPSTNSVSL 89
>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 537
Score = 24.2 bits (50), Expect = 9.5
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 276 LFGLSGAYVWPVRSPGL 226
LFGL GAY W + GL
Sbjct: 393 LFGLCGAYYWSPKMFGL 409
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,856,367
Number of Sequences: 5004
Number of extensions: 35994
Number of successful extensions: 111
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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