Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13f21
(452 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,390... 29 2.3
12_02_0774 - 23035853-23035900,23036027-23036875,23037732-23037905 28 3.1
03_02_0294 + 7176906-7177532 28 3.1
12_02_0310 - 17358220-17358834 28 4.0
11_04_0246 - 15311912-15312481 28 4.0
08_02_0899 + 22401302-22401694 28 4.0
08_02_0713 + 20335317-20335916,20336029-20336071,20336278-20336342 28 4.0
08_02_0332 + 15857514-15858113,15858226-15858268,15858474-15858538 28 4.0
07_03_0421 - 18011768-18011832,18012039-18012081,18012194-18012784 28 4.0
06_03_0261 - 18903429-18903737,18903778-18904125 28 4.0
05_07_0217 - 28469229-28469798 28 4.0
04_04_0900 + 29232365-29232931 28 4.0
04_01_0583 + 7563290-7563904 28 4.0
03_05_0674 + 26619579-26619658,26620020-26620746,26620999-266214... 28 4.0
02_05_0269 + 27307837-27308424 28 4.0
06_03_0395 - 20354713-20355570 27 5.3
01_06_1229 + 35551522-35552169 27 5.3
01_06_0799 - 32072656-32072841,32072846-32072950,32073726-320738... 27 5.3
10_08_0019 - 14167952-14171059 27 7.1
07_01_0622 - 4625246-4627759 27 7.1
01_05_0252 - 19959347-19959541,19960307-19960402,19961028-199611... 27 7.1
02_05_0936 - 32875479-32875573,32875794-32876028,32877752-328778... 27 9.3
01_01_0234 - 1961884-1962627 27 9.3
>08_01_0441 +
3890231-3890845,3891253-3894220,3906625-3906713,
3908317-3908337
Length = 1230
Score = 28.7 bits (61), Expect = 2.3
Identities = 20/67 (29%), Positives = 30/67 (44%)
Frame = +3
Query: 24 YAHHGPQPRSAEPSSAASDTAVPTAVVRAGYSSTVAVHISAPPTRV*TISTSRVHATGTN 203
YA P+PR + A S++AVP + R + + AP + T + V AT
Sbjct: 539 YADKCPKPRRVKVVPAQSNSAVPASKARVNHVAAAEAQ-DAPDVILGTFLVNSVPATVLF 597
Query: 204 LTAAIHS 224
+ A HS
Sbjct: 598 DSGATHS 604
>12_02_0774 - 23035853-23035900,23036027-23036875,23037732-23037905
Length = 356
Score = 28.3 bits (60), Expect = 3.1
Identities = 21/94 (22%), Positives = 42/94 (44%)
Frame = -2
Query: 313 VNRRNWTCLYVIAVWVVRGLCLARAVPWPIEWIAAVKLVPVACTREVLIVQTRVGGAEIC 134
V RR + +++ +V+ L R P + V++ +A + ++ + R GG +C
Sbjct: 145 VGRRGYATAARLSI-LVQPLADVRPPPAAASSRSDVRIERLAVEQAAMLYKRRFGGEPLC 203
Query: 133 TATVEE*PARTTAVGTAVSEAALEGSALLGCGPW 32
+ V+ ++GT ++ A G G G W
Sbjct: 204 PSDVDAVLGAAPSLGTWMARFAGGGGGDGGDGAW 237
>03_02_0294 + 7176906-7177532
Length = 208
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +3
Query: 171 STSRVHATGTNLTAAIHSIGQGTARARHRPLTTQT 275
+TS V A GTN TAA + R R PL+T T
Sbjct: 29 ATSAVVARGTNATAAAANATVMARRGRSSPLSTAT 63
>12_02_0310 - 17358220-17358834
Length = 204
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -2
Query: 151 GGAEICTATVEE*PARTTAVGTAVSEAALEGSA 53
GG E+ ATVE RT AV EAA+E A
Sbjct: 102 GGGEVEAATVEMAVERTAAVERVSEEAAVEKEA 134
>11_04_0246 - 15311912-15312481
Length = 189
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -2
Query: 151 GGAEICTATVEE*PARTTAVGTAVSEAALEGSA 53
GG E+ ATVE RT AV EAA+E A
Sbjct: 102 GGGEVEAATVEMAVERTAAVERVSEEAAVEKEA 134
>08_02_0899 + 22401302-22401694
Length = 130
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = -1
Query: 305 PQLDMPVRNCCLGCQGPMSGPCGPLAYRMDCCGQVGPCCVHARGAYC 165
P D+ V L G +G P +Y CC GPC V G C
Sbjct: 14 PVGDLQVAKLALLVAG--NGFISPSSYLRRCCDDDGPCFVDGAGERC 58
>08_02_0713 + 20335317-20335916,20336029-20336071,20336278-20336342
Length = 235
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -2
Query: 151 GGAEICTATVEE*PARTTAVGTAVSEAALEGSA 53
GG E+ ATVE RT AV EAA+E A
Sbjct: 94 GGGEVEAATVEMAVERTAAVERVSEEAAVEKEA 126
>08_02_0332 + 15857514-15858113,15858226-15858268,15858474-15858538
Length = 235
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -2
Query: 151 GGAEICTATVEE*PARTTAVGTAVSEAALEGSA 53
GG E+ ATVE RT AV EAA+E A
Sbjct: 94 GGGEVEAATVEMAVERTAAVERVSEEAAVEKEA 126
>07_03_0421 - 18011768-18011832,18012039-18012081,18012194-18012784
Length = 232
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -2
Query: 151 GGAEICTATVEE*PARTTAVGTAVSEAALEGSA 53
GG E+ ATVE RT AV EAA+E A
Sbjct: 94 GGGEVEAATVEMAVERTAAVERVSEEAAVEKEA 126
>06_03_0261 - 18903429-18903737,18903778-18904125
Length = 218
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -2
Query: 151 GGAEICTATVEE*PARTTAVGTAVSEAALEGSA 53
GG E+ ATVE RT AV EAA+E A
Sbjct: 136 GGGEVEAATVEMAVERTAAVERVSEEAAVEREA 168
>05_07_0217 - 28469229-28469798
Length = 189
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -2
Query: 151 GGAEICTATVEE*PARTTAVGTAVSEAALEGSA 53
GG E+ ATVE RT AV EAA+E A
Sbjct: 102 GGGEVEAATVEMAVERTAAVERVSEEAAVEKEA 134
>04_04_0900 + 29232365-29232931
Length = 188
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -2
Query: 151 GGAEICTATVEE*PARTTAVGTAVSEAALEGSA 53
GG E+ ATVE RT AV EAA+E A
Sbjct: 74 GGGEVEAATVEMAVERTAAVERVSEEAAVEKEA 106
>04_01_0583 + 7563290-7563904
Length = 204
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -2
Query: 151 GGAEICTATVEE*PARTTAVGTAVSEAALEGSA 53
GG E+ ATVE RT AV EAA+E A
Sbjct: 102 GGGEVEAATVEMSVERTAAVERVSEEAAVEKEA 134
>03_05_0674 +
26619579-26619658,26620020-26620746,26620999-26621486,
26621746-26621902,26621975-26621998
Length = 491
Score = 27.9 bits (59), Expect = 4.0
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = +3
Query: 33 HGPQPRSAEPSSAASDTAVPTAVVRAGYSSTVAVHISAPPTR---V*TISTSRVHATGTN 203
H P+ S +P +AA D ++RA S PP R + +TS V +T T
Sbjct: 373 HAPRSASPQPQAAADDWLARLPILRAAPPSDNYPSCLRPPVRRLITSSSTTSAVPSTSTR 432
Query: 204 LT 209
T
Sbjct: 433 YT 434
>02_05_0269 + 27307837-27308424
Length = 195
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -2
Query: 151 GGAEICTATVEE*PARTTAVGTAVSEAALEGSA 53
GG E+ ATVE RT AV EAA+E A
Sbjct: 102 GGGEVEAATVEMAVERTAAVERVSEEAAVEKEA 134
>06_03_0395 - 20354713-20355570
Length = 285
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = -1
Query: 308 SPQLDMPVRNCCLGCQGP---MSGPCGPLAYRMDCC 210
+P L+ P CC C+GP ++ G + + CC
Sbjct: 132 APPLEAPANGCCRRCRGPSTAVATATGAPSTSLPCC 167
>01_06_1229 + 35551522-35552169
Length = 215
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 197 PCCVHARGAYCSNSCWRCGDMHGYRGGVAGSY 102
PCCV + SC+ ++HG G GSY
Sbjct: 186 PCCVFVQET--DPSCYSVCNVHGEESGAQGSY 215
>01_06_0799 -
32072656-32072841,32072846-32072950,32073726-32073839,
32073935-32073996,32074709-32074745,32075091-32075179,
32075331-32075604
Length = 288
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 51 SAEPSSAASDTAVPTAVVRAGYSSTVAVHISAPP 152
++EP++AA+ A A YSS+ SAPP
Sbjct: 28 ASEPAAAAAAVAASDAAAATDYSSSAGDPSSAPP 61
>10_08_0019 - 14167952-14171059
Length = 1035
Score = 27.1 bits (57), Expect = 7.1
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 271 WVVRGLCLA-RAVPWPIEWIAAVKLVPV 191
W G C+ AV WPI W AVK +PV
Sbjct: 991 WGQWGACVGIAAVSWPIGW--AVKCIPV 1016
>07_01_0622 - 4625246-4627759
Length = 837
Score = 27.1 bits (57), Expect = 7.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 301 NWTCLYVIAVWVVRGLC 251
NW+ Y IA+ V RGLC
Sbjct: 632 NWSTRYQIAIGVARGLC 648
>01_05_0252 -
19959347-19959541,19960307-19960402,19961028-19961132,
19961220-19961439,19961515-19961584,19961659-19962181,
19962621-19962672,19963644-19963867,19963955-19964022,
19965005-19965231,19965747-19965864,19965938-19966058
Length = 672
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -2
Query: 265 VRGLCLARAVPWPIEWIAAVKLVPVACTREVLIVQTRVGGAEI 137
VRG C + A+P + + L P+A E + + R+GG +
Sbjct: 14 VRGCCRSAAIPLHLPPSSFSLLSPIAKGSESTVYEARLGGERV 56
>02_05_0936 - 32875479-32875573,32875794-32876028,32877752-32877848,
32878863-32878927,32879506-32879571,32879735-32879842,
32880169-32880303,32880582-32880647,32881172-32881222,
32881312-32881386,32881834-32881896,32882694-32882783,
32882903-32883100,32883189-32883315,32883482-32884100,
32884228-32884265,32884651-32884718,32885056-32885100,
32885243-32885302,32885510-32885593,32885677-32885868,
32887361-32887663
Length = 959
Score = 26.6 bits (56), Expect = 9.3
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Frame = +2
Query: 11 ALHYLCAPWTTAKKR----RALQCSLRYSRAHSCSTSRLLLHGSRAYLR 145
A Y APW A R R QCSL Y + ++ L HG R Y R
Sbjct: 906 AATYNVAPWYDASLRHPHPRVYQCSLGYIVKLAGVSTGLNPHGDRDYSR 954
>01_01_0234 - 1961884-1962627
Length = 247
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 263 QGPMSGPCGPLAYRMDCCGQVG 198
QG PCGPL Y++ C G
Sbjct: 53 QGQADKPCGPLDYQVYCNNSTG 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,710,015
Number of Sequences: 37544
Number of extensions: 265674
Number of successful extensions: 977
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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