Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13f20
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   116   3e-27
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   114   1e-26
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    60   4e-10
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    31   0.17 
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    27   2.8  
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    26   5.0  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    26   6.6  
SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa...    25   8.7  

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  116 bits (280), Expect = 3e-27
 Identities = 51/62 (82%), Positives = 57/62 (91%)
 Frame = -1

Query: 748 WARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSTEGELDEE 569
           W+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG DS + E+ E 
Sbjct: 392 WSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDSMDNEMYEA 451

Query: 568 NE 563
           +E
Sbjct: 452 DE 453


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  114 bits (275), Expect = 1e-26
 Identities = 53/63 (84%), Positives = 57/63 (90%)
 Frame = -1

Query: 748 WARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSTEGELDEE 569
           W+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG DS E +  EE
Sbjct: 388 WSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDSMEVDYMEE 447

Query: 568 NEY 560
            EY
Sbjct: 448 -EY 449


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 59.7 bits (138), Expect = 4e-10
 Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 5/65 (7%)
 Frame = -1

Query: 742 RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVGVD--STEGEL 578
           RL  +F  M+ ++AF+HWY GEGM+E EF+EA     DL +  + Y+E G+D    + E+
Sbjct: 380 RLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGIDEGDEDYEI 439

Query: 577 DEENE 563
           +EE E
Sbjct: 440 EEEKE 444


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -2

Query: 318 PFFSDDQFYVTFCQFENISFNRYFCILNVCVTVQ-ILNYRIIIWISGEFGVICI 160
           PF  D     TF   +N+    +FC + +C+ V       +I  I+ E+G+ C+
Sbjct: 322 PFLVDAVDAYTFGVLKNVQTEYFFCYVGICIGVYGNFVAHVIAMITEEYGIKCL 375


>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 670 EEGEFSEAREDLAALEKDYEEVGVDSTEGELDEENE 563
           E GEF +A ED    E++Y E   +   G +DEE +
Sbjct: 31  EMGEFEDAYEDEIESEEEYIEADGEKDNG-MDEEEQ 65


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = +1

Query: 235 IQNTKISVKTYVFKLTKRYVE----LIITKERPTVSEITIKKNMLVITMLLIPKL 387
           ++N  ISV  Y F   KR++         + R  ++ IT   ++L++ +L + +L
Sbjct: 157 LRNPNISVALYAFASAKRHLTDDAVAFARQARVALTNITTTDSLLILVLLAVTQL 211


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = -2

Query: 315 FFSDDQFYVTFCQFENISFNRYFCILNVCV 226
           ++++  F +  C+F++IS     C+L +C+
Sbjct: 188 YYANQAFSLLPCRFQDISLTNITCLLLLCL 217


>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 396

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 652 EAREDLAALEKDYEEVGVDSTEGELDEENEY*SGMKNSRSVL 527
           E   DL A   D E   ++ +  ELDEEN Y   ++ S S L
Sbjct: 72  EEDPDLEAYLSDLEREELEHSLEELDEENNYKLHLRYSFSQL 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,882,648
Number of Sequences: 5004
Number of extensions: 59952
Number of successful extensions: 164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)