Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13f17
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    28   1.0  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    28   1.4  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    26   4.2  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   7.4  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   9.7  

>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/21 (66%), Positives = 15/21 (71%)
 Frame = +2

Query: 536 YTTCESSILIFPLFFLRSVVF 598
           YT C SSILIF  FF  SV+F
Sbjct: 153 YTMCRSSILIFVFFF--SVIF 171


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 359 LSKNLVNFTEFVEPGARDLKYYNLISR 439
           L KN+ NFT   + G RD  Y   IS+
Sbjct: 215 LQKNVANFTSIKDSGGRDNLYIQTISK 241


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 233 RIVSTFNYLQIYLKCMI*MYSTRHEYKVFRLID 331
           R+ +  +   I L CM+ +Y +++EY  + LID
Sbjct: 65  RVNTEMSLNHINLTCMLLLYKSKYEYITWDLID 97


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +2

Query: 356 TLSKNLVNFT---EFVEPGARDLKYYNLISRY*KSCL*TTEYFQWLPCLMTGYKY 511
           TLS N V+     EFV P   +L  Y + +R    C    EYF+ L  L   Y Y
Sbjct: 789 TLSGNPVSSLSSQEFVMPTVEEL--YLVDNRLGNDCFTALEYFKCLKVLNLSYNY 841


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +1

Query: 466 RIFSMVTLPDDRLQIFRQHRIVQLYYLRVFYTDFSFVF 579
           R F +  LP + +Q+ R H +  + + RV+      +F
Sbjct: 756 RDFKIAMLPKETVQVVRSHHLDDIVFDRVYNVSTKALF 793


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,636,447
Number of Sequences: 5004
Number of extensions: 53911
Number of successful extensions: 150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)