Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13f17
         (662 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC020832-1|AAH20832.1|  236|Homo sapiens RAB, member of RAS onco...    34   0.39 
BC011997-1|AAH11997.1|  417|Homo sapiens actin-related protein 1...    30   8.5  
BC005208-1|AAH05208.1|  339|Homo sapiens Unknown (protein for IM...    30   8.5  
AK222702-1|BAD96422.1|  417|Homo sapiens uncharacterized hypotha...    30   8.5  
AK222624-1|BAD96344.1|  417|Homo sapiens uncharacterized hypotha...    30   8.5  
AK022534-1|BAB14083.1|  417|Homo sapiens protein ( Homo sapiens ...    30   8.5  
AK000544-1|BAA91243.1|  417|Homo sapiens protein ( Homo sapiens ...    30   8.5  
AF220190-1|AAF67655.1|  417|Homo sapiens uncharacterized hypotha...    30   8.5  

>BC020832-1|AAH20832.1|  236|Homo sapiens RAB, member of RAS
           oncogene family-like 3 protein.
          Length = 236

 Score = 34.3 bits (75), Expect = 0.39
 Identities = 15/23 (65%), Positives = 19/23 (82%)
 Frame = -3

Query: 414 RSLAPGSTNSVKLTRFFDKVFHE 346
           R LA GS+N+VKL+RFFDKV  +
Sbjct: 184 RYLAAGSSNAVKLSRFFDKVIEK 206



 Score = 31.1 bits (67), Expect = 3.7
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -2

Query: 622 IPILVIGTKYDAAEEKQRKNQYRRLASSIAEQCGADEIFVTCHQAR 485
           IP+LVIGTK D   E +R ++     + +AE    +EI + C   R
Sbjct: 140 IPLLVIGTKLDQIHETKR-HEVLTTTAFLAEDFNPEEINLDCTNPR 184


>BC011997-1|AAH11997.1|  417|Homo sapiens actin-related protein 10
           homolog (S. cerevisiae) protein.
          Length = 417

 Score = 29.9 bits (64), Expect = 8.5
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = -3

Query: 330 SINLNTLYSCLVEYIHIIHFKYI 262
           +IN   LYS L E+IHI++F+++
Sbjct: 58  NINTEELYSYLKEFIHILYFRHL 80


>BC005208-1|AAH05208.1|  339|Homo sapiens Unknown (protein for
           IMAGE:3950510) protein.
          Length = 339

 Score = 29.9 bits (64), Expect = 8.5
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = -3

Query: 330 SINLNTLYSCLVEYIHIIHFKYI 262
           +IN   LYS L E+IHI++F+++
Sbjct: 58  NINTEELYSYLKEFIHILYFRHL 80


>AK222702-1|BAD96422.1|  417|Homo sapiens uncharacterized
           hypothalamus protein HARP11 variant protein.
          Length = 417

 Score = 29.9 bits (64), Expect = 8.5
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = -3

Query: 330 SINLNTLYSCLVEYIHIIHFKYI 262
           +IN   LYS L E+IHI++F+++
Sbjct: 58  NINTEELYSYLKEFIHILYFRHL 80


>AK222624-1|BAD96344.1|  417|Homo sapiens uncharacterized
           hypothalamus protein HARP11 variant protein.
          Length = 417

 Score = 29.9 bits (64), Expect = 8.5
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = -3

Query: 330 SINLNTLYSCLVEYIHIIHFKYI 262
           +IN   LYS L E+IHI++F+++
Sbjct: 58  NINTEELYSYLKEFIHILYFRHL 80


>AK022534-1|BAB14083.1|  417|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12472 fis, clone NT2RM1000898, weakly similar to
           ACTIN, CYTOPLASMIC. ).
          Length = 417

 Score = 29.9 bits (64), Expect = 8.5
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = -3

Query: 330 SINLNTLYSCLVEYIHIIHFKYI 262
           +IN   LYS L E+IHI++F+++
Sbjct: 58  NINTEELYSYLKEFIHILYFRHL 80


>AK000544-1|BAA91243.1|  417|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20537 fis, clone KAT11250. ).
          Length = 417

 Score = 29.9 bits (64), Expect = 8.5
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = -3

Query: 330 SINLNTLYSCLVEYIHIIHFKYI 262
           +IN   LYS L E+IHI++F+++
Sbjct: 58  NINTEELYSYLKEFIHILYFRHL 80


>AF220190-1|AAF67655.1|  417|Homo sapiens uncharacterized
           hypothalamus protein HARP11 protein.
          Length = 417

 Score = 29.9 bits (64), Expect = 8.5
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = -3

Query: 330 SINLNTLYSCLVEYIHIIHFKYI 262
           +IN   LYS L E+IHI++F+++
Sbjct: 58  NINTEELYSYLKEFIHILYFRHL 80


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,179,781
Number of Sequences: 237096
Number of extensions: 1650076
Number of successful extensions: 2489
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2489
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7478817430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)