Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13f17
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83233-2|CAB05761.1|  338|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AF273797-2|AAG15146.1|  338|Caenorhabditis elegans nuclear recep...    30   1.7  
AL110485-26|CAB60359.3|  779|Caenorhabditis elegans Hypothetical...    28   5.1  
AC006708-19|AAF60423.3|  588|Caenorhabditis elegans Mtm (myotubu...    28   5.1  

>Z83233-2|CAB05761.1|  338|Caenorhabditis elegans Hypothetical
           protein K06B4.2 protein.
          Length = 338

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -1

Query: 488 KVTIENILLFINMIFSNAKLNYNISDP*LQAL-RIQ*N*QDFLIRYFTNKEQY 333
           K+T E  LL I ++F N  +++ +SD   + L + Q     FL R+   K Q+
Sbjct: 236 KITYEEYLLLIMIVFCNPSISHELSDSARETLSKYQNMYASFLFRFCQLKNQH 288


>AF273797-2|AAG15146.1|  338|Caenorhabditis elegans nuclear receptor
           NHR-52 protein.
          Length = 338

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -1

Query: 488 KVTIENILLFINMIFSNAKLNYNISDP*LQAL-RIQ*N*QDFLIRYFTNKEQY 333
           K+T E  LL I ++F N  +++ +SD   + L + Q     FL R+   K Q+
Sbjct: 236 KITYEEYLLLIMIVFCNPSISHELSDSARETLSKYQNMYASFLFRFCQLKNQH 288


>AL110485-26|CAB60359.3|  779|Caenorhabditis elegans Hypothetical
           protein Y46G5A.17 protein.
          Length = 779

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 280 HTFQIYLQVIERRYYSRVSPFSDKRRIPPYIMATS-TPLS 164
           H F +Y   + +RY    SPF D    P Y+++TS TP++
Sbjct: 656 HLFALY---VIKRYLEEESPFFDNIFPPTYLLSTSQTPMN 692


>AC006708-19|AAF60423.3|  588|Caenorhabditis elegans Mtm
           (myotubularin) family protein 1 protein.
          Length = 588

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 249 NVDTIRELVHFQIKDVFPRTSWLRQLLFLTTDHLNI*VQGFIIWIK 112
           NVDT ++ V     D + RT+ L  L  +  D     ++GFI+ I+
Sbjct: 366 NVDTEKQSVLIHCSDGWDRTAQLTSLAMIQLDSYYRTIEGFIVLIE 411


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,047,105
Number of Sequences: 27780
Number of extensions: 283719
Number of successful extensions: 585
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)