Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13f16
(758 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014134-808|AAF50957.4| 1286|Drosophila melanogaster CG3047-PA ... 31 2.3
AY944324-1|AAY33994.1| 418|Drosophila melanogaster rhino protein. 30 3.9
AY944323-1|AAY33993.1| 418|Drosophila melanogaster rhino protein. 30 3.9
AY944321-1|AAY33991.1| 418|Drosophila melanogaster rhino protein. 30 3.9
BT021307-1|AAX33455.1| 118|Drosophila melanogaster RE17110p pro... 29 5.2
AY071729-1|AAL49351.1| 587|Drosophila melanogaster RH44874p pro... 29 5.2
AE014296-2016|AAF50020.1| 91|Drosophila melanogaster CG14132-P... 29 5.2
AE014134-355|AAF51292.1| 587|Drosophila melanogaster CG15385-PA... 29 5.2
AY118688-1|AAM50548.1| 709|Drosophila melanogaster AT15442p pro... 29 6.9
AE014298-3210|AAF50936.1| 709|Drosophila melanogaster CG12446-P... 29 6.9
BT003550-1|AAO39554.1| 591|Drosophila melanogaster RE01835p pro... 29 9.1
AE014297-3043|AAF55921.2| 591|Drosophila melanogaster CG6703-PA... 29 9.1
>AE014134-808|AAF50957.4| 1286|Drosophila melanogaster CG3047-PA
protein.
Length = 1286
Score = 30.7 bits (66), Expect = 2.3
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = -3
Query: 378 STTPRRRCRTAPDESAPQCTRCLTERIGNTTIKVTPSK*TDTPPKSTLRIFPIT 217
+TT R T P + CT T +T T S+ T T P+ST P T
Sbjct: 1109 TTTTSRPTTTTPRSTTTPCTSRPTTTTPRSTTTTTTSRPTTTTPRSTTTPCPTT 1162
Score = 29.5 bits (63), Expect = 5.2
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -3
Query: 378 STTPRRRCRTAPDESAPQCTRCLTERIGNTTIKVTPSK*TDTPPKST 238
+TTP C T ++ P CT T +T + S+ T T P+ST
Sbjct: 198 TTTPTPTCSTQGTQTTP-CTCAQTTTTPRSTTTTSTSRPTTTTPRST 243
>AY944324-1|AAY33994.1| 418|Drosophila melanogaster rhino protein.
Length = 418
Score = 29.9 bits (64), Expect = 3.9
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 451 GQASPGIFNSRGAADGSDISSRRFIDYPAPQMQDSPRRKRSTVYP 317
G A+ + + G D+S R +D M+ PRRKR YP
Sbjct: 301 GHAASSLGAPKEGDIGLDLSGRDSMDSEVESMRRCPRRKRKKTYP 345
>AY944323-1|AAY33993.1| 418|Drosophila melanogaster rhino protein.
Length = 418
Score = 29.9 bits (64), Expect = 3.9
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 451 GQASPGIFNSRGAADGSDISSRRFIDYPAPQMQDSPRRKRSTVYP 317
G A+ + + G D+S R +D M+ PRRKR YP
Sbjct: 301 GHAASSLGAPKEGDIGLDLSGRDSMDSEVESMRRCPRRKRKKTYP 345
>AY944321-1|AAY33991.1| 418|Drosophila melanogaster rhino protein.
Length = 418
Score = 29.9 bits (64), Expect = 3.9
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 451 GQASPGIFNSRGAADGSDISSRRFIDYPAPQMQDSPRRKRSTVYP 317
G A+ + + G D+S R +D M+ PRRKR YP
Sbjct: 301 GHAASSLGAPKEGDIGLDLSGRDSMDSEVESMRRCPRRKRKKTYP 345
>BT021307-1|AAX33455.1| 118|Drosophila melanogaster RE17110p
protein.
Length = 118
Score = 29.5 bits (63), Expect = 5.2
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 670 CHEYIEDENVEFPTCCARLRCV 605
C E D N FP CC + +CV
Sbjct: 85 CEELPSDPNWRFPKCCPQFKCV 106
>AY071729-1|AAL49351.1| 587|Drosophila melanogaster RH44874p
protein.
Length = 587
Score = 29.5 bits (63), Expect = 5.2
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 493 MSGIQQTPVGGEPQGQASPGIFNSRGAADGSDISSRRFIDY 371
M ++ TP GG G +S G +S G +++RF Y
Sbjct: 38 MGNVESTPSGGSVFGPSSSGTVSSLGGDSSPSSTAQRFAKY 78
>AE014296-2016|AAF50020.1| 91|Drosophila melanogaster CG14132-PA
protein.
Length = 91
Score = 29.5 bits (63), Expect = 5.2
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 670 CHEYIEDENVEFPTCCARLRCV 605
C E D N FP CC + +CV
Sbjct: 58 CEELPSDPNWRFPKCCPQFKCV 79
>AE014134-355|AAF51292.1| 587|Drosophila melanogaster CG15385-PA
protein.
Length = 587
Score = 29.5 bits (63), Expect = 5.2
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 493 MSGIQQTPVGGEPQGQASPGIFNSRGAADGSDISSRRFIDY 371
M ++ TP GG G +S G +S G +++RF Y
Sbjct: 38 MGNVESTPSGGSVFGPSSSGTVSSLGGDSSPSSTAQRFAKY 78
>AY118688-1|AAM50548.1| 709|Drosophila melanogaster AT15442p
protein.
Length = 709
Score = 29.1 bits (62), Expect = 6.9
Identities = 21/73 (28%), Positives = 30/73 (41%)
Frame = +3
Query: 498 TTAGFGSFCWPFHGLSGNSSPGCPLVCTILSPFTSTTQRNRAQHVGNSTFSSSMYSWHSS 677
T GF FC H L P TI+ FT + ++G S FSS S
Sbjct: 533 TVHGFQEFCITLHRLKSAHKVAPPP--TIMELFTRAPPNSDQTNIGGSDFSSCRSLPDIS 590
Query: 678 AFSGIFGFRHPTA 716
+ S ++ + P+A
Sbjct: 591 SHSRLWPHKPPSA 603
>AE014298-3210|AAF50936.1| 709|Drosophila melanogaster CG12446-PA
protein.
Length = 709
Score = 29.1 bits (62), Expect = 6.9
Identities = 21/73 (28%), Positives = 30/73 (41%)
Frame = +3
Query: 498 TTAGFGSFCWPFHGLSGNSSPGCPLVCTILSPFTSTTQRNRAQHVGNSTFSSSMYSWHSS 677
T GF FC H L P TI+ FT + ++G S FSS S
Sbjct: 533 TVHGFQEFCITLHRLKSAHKVAPPP--TIMELFTRAPPNSDQTNIGGSDFSSCRSLPDIS 590
Query: 678 AFSGIFGFRHPTA 716
+ S ++ + P+A
Sbjct: 591 SHSRLWPHKPPSA 603
>BT003550-1|AAO39554.1| 591|Drosophila melanogaster RE01835p
protein.
Length = 591
Score = 28.7 bits (61), Expect = 9.1
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -3
Query: 339 ESAPQCTRCLTERIGNTTIKVTPSK*TDTPPKSTLRIFP 223
+S Q R L E G+ T K+ PS + PP RI P
Sbjct: 235 QSVGQLQRMLREARGSVTFKIVPSYRSAPPPCELFRIRP 273
>AE014297-3043|AAF55921.2| 591|Drosophila melanogaster CG6703-PA,
isoform A protein.
Length = 591
Score = 28.7 bits (61), Expect = 9.1
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -3
Query: 339 ESAPQCTRCLTERIGNTTIKVTPSK*TDTPPKSTLRIFP 223
+S Q R L E G+ T K+ PS + PP RI P
Sbjct: 235 QSVGQLQRMLREARGSVTFKIVPSYRSAPPPCELFRIRP 273
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,273,219
Number of Sequences: 53049
Number of extensions: 833310
Number of successful extensions: 2892
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2891
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3478915869
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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