Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13f15
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    28   1.4  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    27   2.4  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   3.2  
SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein Bqt1|Sc...    27   4.2  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    26   5.5  
SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces pombe...    26   5.5  

>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 23/110 (20%), Positives = 44/110 (40%)
 Frame = -3

Query: 583 ENVTSTTGSLLPMFLDFLFHRKPNPQLTSVTREHEISSNPKNFEQDNFIESKEIVTNGHP 404
           +N +S T SL P         +    + S     +I  +     +++F+++        P
Sbjct: 190 QNTSSPTNSLRPQLKVQTNGYETPGDINSAKSYKDIQKDFLLKPKNSFVKTSPSPLANGP 249

Query: 403 IIPKTDLKNRDSEDIKKNDLAMPIDSASYRLTIDLNGNIIASNTACHAFI 254
                +    DS D   +  ++PI+  S R +  +N N +    A HAF+
Sbjct: 250 SFRSANASPFDSCDSFHSGSSIPIEPVSSRQSSVVNNNSVQQPVAYHAFV 299


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -3

Query: 802 LAETESKTDIILDRNEQNTLLVTEQMLLKDKSFATTTLGDGLSDKSSKTTP 650
           L ++ S  DI+LD N+ +    T+  L K KSF      D L+  SS   P
Sbjct: 196 LQKSHSLHDILLDTNDDDHFPFTQSPLTKTKSF-----NDALTSSSSILKP 241


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = -3

Query: 520  KPNPQLTSVTREHEISSNPKNFEQDNFIESKEIVTNGHPIIPKTDLKNRDSEDIKKND 347
            K  P+L SV+ E ++     N  +   +ESKEI  +       +D+ N  SEDI K++
Sbjct: 1712 KLTPEL-SVSPESDMHFKDGNSSKLEIVESKEIYASD------SDISNSTSEDINKDE 1762


>SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein
           Bqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 8/32 (25%), Positives = 19/32 (59%)
 Frame = -2

Query: 110 LCLNGSCYSIKFIKHCSYMLSVYLSKFLYFVY 15
           +C + +C   +F+KH    +S+   ++LY ++
Sbjct: 30  VCTDSNCEHARFLKHSLIQVSIERIEYLYSIF 61


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 492 HENMKYRQTLKTLNKTILSN-QRK*LQMVIL*FLKQILK 379
           HE +K   TLK+L K  LSN + + L+   L  LKQ+ K
Sbjct: 828 HEELKNLSTLKSLAKEFLSNYKEENLENSTLVQLKQLSK 866


>SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 281

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
 Frame = -3

Query: 274 TACHAFIGTLFNDAL-NYKGDQNIT---EFITTELSLFCNGVLMS 152
           TA  +  G L+  ++ N+ G++N +   +FIT++L LFC  + M+
Sbjct: 86  TAGESLDGYLYGGSIINFIGEKNESSRIDFITSDLVLFCLQIFMA 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,857
Number of Sequences: 5004
Number of extensions: 50822
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)