Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13f15
         (813 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0332 - 23239114-23239221,23239318-23239446,23239620-232397...    31   1.4  
10_08_0488 + 18258178-18258228,18258864-18258926,18259006-182591...    30   1.9  
09_04_0103 - 14623125-14623475,14623574-14623672,14624089-146247...    29   4.4  
01_06_0629 + 30712268-30713023                                         29   5.8  

>03_05_0332 -
           23239114-23239221,23239318-23239446,23239620-23239709,
           23239827-23239906,23240097-23240177,23240316-23240376,
           23240615-23240734,23240999-23241070,23241164-23241214,
           23241357-23241443,23241567-23241674,23241840-23241935,
           23242024-23242086,23242554-23242610
          Length = 400

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 645 EFGVVFDDLSDRPSPNVVVANDLSFSNICSVTNKVFCSL 761
           +FG VF  L  +  PN+V   D  FSN+    + VFC L
Sbjct: 97  QFGSVFPHLITQDLPNLVAVKDADFSNV----DAVFCCL 131


>10_08_0488 +
           18258178-18258228,18258864-18258926,18259006-18259143,
           18259355-18259462,18259691-18259777,18259911-18259961,
           18260058-18260129,18260323-18260442,18260695-18260742,
           18261060-18261239,18261365-18261454,18261619-18261951
          Length = 446

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 645 EFGVVFDDLSDRPSPNVVVANDLSFSNICSVTNKVFCSL 761
           +FG VF  L  +  PN+V   D  FSN+    + VFC L
Sbjct: 109 QFGSVFPHLITQDLPNLVAIKDADFSNV----DAVFCCL 143


>09_04_0103 -
           14623125-14623475,14623574-14623672,14624089-14624724,
           14625803-14625964
          Length = 415

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = -3

Query: 484 HEISSNPKNFEQDNFIESKEIVTNGHPIIPKTDLKNRDSEDIKKNDLAMPI 332
           H I +NP   EQ  FIE+        P+ PKTD + R S+ + KN L + +
Sbjct: 327 HRIQANPTIREQPVFIET-------GPVKPKTD-RARQSKRLTKNGLCLEV 369


>01_06_0629 + 30712268-30713023
          Length = 251

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +3

Query: 654 VVFDDLSDRPSPNVVVANDLSFSNICSVTNKVFCSLRSKIMSVL---LSVSANCS 809
           V  D L+DR SPN V A DL F    ++T+    S R  ++ +    L +  NCS
Sbjct: 175 VTLDVLADRISPN-VNATDLIFGQGYNLTSYTEISGRVNVLGIYKRNLDIKMNCS 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,553,525
Number of Sequences: 37544
Number of extensions: 259856
Number of successful extensions: 561
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)