Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13f15
(813 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY070537-1|AAL48008.2| 699|Drosophila melanogaster LD12230p pro... 33 0.46
AY069710-1|AAL39855.1| 844|Drosophila melanogaster LD48056p pro... 33 0.46
AE013599-1660|AAS64862.1| 844|Drosophila melanogaster CG4616-PB... 33 0.46
AE013599-1659|AAF58410.2| 844|Drosophila melanogaster CG4616-PA... 33 0.46
BT023915-1|ABA81849.1| 323|Drosophila melanogaster AT03124p pro... 31 1.9
AE013599-962|AAF58879.1| 323|Drosophila melanogaster CG12923-PA... 31 1.9
D13964-1|BAA03067.2| 917|Drosophila melanogaster alpha-catenin ... 29 5.7
AY051780-1|AAK93204.1| 917|Drosophila melanogaster LD30423p pro... 29 5.7
AE014296-3768|AAF45466.1| 917|Drosophila melanogaster CG17947-P... 29 5.7
>AY070537-1|AAL48008.2| 699|Drosophila melanogaster LD12230p
protein.
Length = 699
Score = 33.1 bits (72), Expect = 0.46
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Frame = -3
Query: 586 DENVTSTTGSLLPMFLDFLFHRKPNPQLTSVTREHEISSNPKNFEQDNFIESKEIV--TN 413
DE + S +P+ + + +P ++ S R+ + +N N +++ +E+K+I TN
Sbjct: 204 DETNDQRSKSPVPVTVKLVTESQPAEKVVSNRRDAALETNA-NSSKESKVETKDITQPTN 262
Query: 412 G---------HPIIPKTDLKNRDSEDIKKNDLAM 338
G H IIP L N +S D KN++ +
Sbjct: 263 GLIAEPCIPKHEIIPGLSLINPESADFSKNEIKL 296
>AY069710-1|AAL39855.1| 844|Drosophila melanogaster LD48056p
protein.
Length = 844
Score = 33.1 bits (72), Expect = 0.46
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Frame = -3
Query: 586 DENVTSTTGSLLPMFLDFLFHRKPNPQLTSVTREHEISSNPKNFEQDNFIESKEIV--TN 413
DE + S +P+ + + +P ++ S R+ + +N N +++ +E+K+I TN
Sbjct: 349 DETNDQRSKSPVPVTVKLVTESQPAEKVVSNRRDAALETNA-NSSKESKVETKDITQPTN 407
Query: 412 G---------HPIIPKTDLKNRDSEDIKKNDLAM 338
G H IIP L N +S D KN++ +
Sbjct: 408 GLIAEPCIPKHEIIPGLSLINPESADFSKNEIKL 441
>AE013599-1660|AAS64862.1| 844|Drosophila melanogaster CG4616-PB,
isoform B protein.
Length = 844
Score = 33.1 bits (72), Expect = 0.46
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Frame = -3
Query: 586 DENVTSTTGSLLPMFLDFLFHRKPNPQLTSVTREHEISSNPKNFEQDNFIESKEIV--TN 413
DE + S +P+ + + +P ++ S R+ + +N N +++ +E+K+I TN
Sbjct: 349 DETNDQRSKSPVPVTVKLVTESQPAEKVVSNRRDAALETNA-NSSKESKVETKDITQPTN 407
Query: 412 G---------HPIIPKTDLKNRDSEDIKKNDLAM 338
G H IIP L N +S D KN++ +
Sbjct: 408 GLIAEPCIPKHEIIPGLSLINPESADFSKNEIKL 441
>AE013599-1659|AAF58410.2| 844|Drosophila melanogaster CG4616-PA,
isoform A protein.
Length = 844
Score = 33.1 bits (72), Expect = 0.46
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Frame = -3
Query: 586 DENVTSTTGSLLPMFLDFLFHRKPNPQLTSVTREHEISSNPKNFEQDNFIESKEIV--TN 413
DE + S +P+ + + +P ++ S R+ + +N N +++ +E+K+I TN
Sbjct: 349 DETNDQRSKSPVPVTVKLVTESQPAEKVVSNRRDAALETNA-NSSKESKVETKDITQPTN 407
Query: 412 G---------HPIIPKTDLKNRDSEDIKKNDLAM 338
G H IIP L N +S D KN++ +
Sbjct: 408 GLIAEPCIPKHEIIPGLSLINPESADFSKNEIKL 441
>BT023915-1|ABA81849.1| 323|Drosophila melanogaster AT03124p
protein.
Length = 323
Score = 31.1 bits (67), Expect = 1.9
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Frame = -3
Query: 400 IPKTDLKNRDSEDIKKND-----LAMPIDSASYRLTIDLNGNIIASNTAC 266
+P T L+NR S D +N L P D +T+ L G +A T+C
Sbjct: 219 LPNTALRNRRSPDSHRNSEFVLWLVTPSDGLQLNVTLSLYGRDVALRTSC 268
>AE013599-962|AAF58879.1| 323|Drosophila melanogaster CG12923-PA
protein.
Length = 323
Score = 31.1 bits (67), Expect = 1.9
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Frame = -3
Query: 400 IPKTDLKNRDSEDIKKND-----LAMPIDSASYRLTIDLNGNIIASNTAC 266
+P T L+NR S D +N L P D +T+ L G +A T+C
Sbjct: 219 LPNTALRNRRSPDSHRNSEFVLWLVTPSDGLQLNVTLSLYGRDVALRTSC 268
>D13964-1|BAA03067.2| 917|Drosophila melanogaster alpha-catenin
protein.
Length = 917
Score = 29.5 bits (63), Expect = 5.7
Identities = 13/49 (26%), Positives = 30/49 (61%)
Frame = -3
Query: 475 SSNPKNFEQDNFIESKEIVTNGHPIIPKTDLKNRDSEDIKKNDLAMPID 329
+++ K+ ++++FI++ +V +G I + L NR SED+ + P++
Sbjct: 603 NNSNKDVDENDFIDASRLVYDGVREIRRAVLMNRSSEDLDTDTEFEPVE 651
>AY051780-1|AAK93204.1| 917|Drosophila melanogaster LD30423p
protein.
Length = 917
Score = 29.5 bits (63), Expect = 5.7
Identities = 13/49 (26%), Positives = 30/49 (61%)
Frame = -3
Query: 475 SSNPKNFEQDNFIESKEIVTNGHPIIPKTDLKNRDSEDIKKNDLAMPID 329
+++ K+ ++++FI++ +V +G I + L NR SED+ + P++
Sbjct: 603 NNSNKDVDENDFIDASRLVYDGVREIRRAVLMNRSSEDLDTDTEFEPVE 651
>AE014296-3768|AAF45466.1| 917|Drosophila melanogaster CG17947-PA
protein.
Length = 917
Score = 29.5 bits (63), Expect = 5.7
Identities = 13/49 (26%), Positives = 30/49 (61%)
Frame = -3
Query: 475 SSNPKNFEQDNFIESKEIVTNGHPIIPKTDLKNRDSEDIKKNDLAMPID 329
+++ K+ ++++FI++ +V +G I + L NR SED+ + P++
Sbjct: 603 NNSNKDVDENDFIDASRLVYDGVREIRRAVLMNRSSEDLDTDTEFEPVE 651
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,979,005
Number of Sequences: 53049
Number of extensions: 498702
Number of successful extensions: 1133
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3818998872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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