Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13f15
         (813 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   1.5  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    24   1.9  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   2.5  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -3

Query: 595 HQIDENVTSTTGSLLPMFLDFLFHRKPNPQLTSVTREHEISSNPKNFEQDNFIESK 428
           HQI  NVT      L  F D+    + +  +T +  +  +S  P +F+  N+I  K
Sbjct: 65  HQIANNVTMQLLPKLMEFDDWTSVMELHSWMTLMWTDSHLSWKPSDFDGINYIYVK 120


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 490 REHEISSNPKNFEQDNFIESKEIVTNGHPIIP 395
           R+  I  NP  F+ DNF+  K    + +  +P
Sbjct: 449 RQPHIYPNPDVFDPDNFLPEKTANRHYYAFVP 480


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 526 HRKPNPQLTSVTREHEISSNPKNFEQDNFIESKE 425
           HR   P+ T+V +  +    P  F  D+F ++KE
Sbjct: 418 HRPFEPKSTAVQKYQDQDYQPIYFVADSFEDAKE 451


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,571
Number of Sequences: 438
Number of extensions: 3654
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)