Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13f13
(547 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0144 - 7153464-7153822,7153933-7154837,7155962-7156224 31 0.60
03_06_0565 + 34747278-34748066,34748170-34748406,34749777-347498... 30 1.4
09_04_0598 + 18875270-18875437,18875547-18876179 29 1.8
03_05_1141 - 30701077-30701167,30701264-30701382,30701495-307016... 29 1.8
08_02_1288 + 25902264-25902431,25902506-25903090 28 5.6
02_01_0519 - 3748415-3748432,3749010-3749041,3749474-3749606,374... 28 5.6
04_03_0611 - 18011469-18012563,18012756-18012920,18013542-180136... 27 7.4
04_04_0671 - 27157692-27158620,27158711-27158828,27158967-271591... 27 9.8
>02_02_0144 - 7153464-7153822,7153933-7154837,7155962-7156224
Length = 508
Score = 31.1 bits (67), Expect = 0.60
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -1
Query: 427 LFSTS*SCTS*YRPIRRPERQLLLRRISDCDARSWKSAPTF 305
+F CT P RRP Q +LRR+ C AR W+ P F
Sbjct: 469 VFKLGVECTM-MDPQRRPSMQTVLRRLRQC-ARWWRRFPCF 507
>03_06_0565 +
34747278-34748066,34748170-34748406,34749777-34749869,
34751752-34751988,34752398-34752584,34752956-34753028,
34753145-34753289,34753670-34753779,34754127-34754258,
34754328-34754469,34754545-34754679,34756278-34756435,
34757327-34757401,34757505-34757643,34757838-34757952,
34758016-34758107,34758500-34758613
Length = 990
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 333 PDPGSLPLLSQTPSLVVKCDQEGD 262
P+P S P+LS PS++ +C Q D
Sbjct: 290 PEPFSRPILSANPSIIARCLQPSD 313
>09_04_0598 + 18875270-18875437,18875547-18876179
Length = 266
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +2
Query: 281 LTTRLGV*ESRGRLPGSGVTVGNPPQEQLPFRSSNGAILTGTTSASRK*LIPTNMRMQMS 460
L T G+ + RL +T N + L +S I+ T A+ L T + +S
Sbjct: 36 LRTAAGINSATRRLWAISMTKDNEKKAVLVVQSLRNVIMGSTLVATTAILFCTGIAAVLS 95
Query: 461 QKYTLKEPI 487
YT+K+P+
Sbjct: 96 STYTIKKPL 104
>03_05_1141 -
30701077-30701167,30701264-30701382,30701495-30701622,
30701683-30701914
Length = 189
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 466 IYPQGAHLMFVFNVE*IGTDSACSCPC 546
+YP AH+ F F+ TD+AC+C C
Sbjct: 71 VYPVAAHVHFAFHE----TDTACTCAC 93
>08_02_1288 + 25902264-25902431,25902506-25903090
Length = 250
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = +2
Query: 281 LTTRLGV*ESRGRLPGSGVTVGNPPQEQLPFRSSNGAILTGTTSASRK*LIPTNMRMQMS 460
L++ +G+ + RL G+ N + L +S I+ T A+ L T + +S
Sbjct: 36 LSSTVGINTATRRLWVLGMMKDNEKKAVLVVQSMRNVIMGSTLMATTAILFCTGVAAILS 95
Query: 461 QKYTLKEPI 487
YT+K+P+
Sbjct: 96 STYTVKKPL 104
>02_01_0519 -
3748415-3748432,3749010-3749041,3749474-3749606,
3749702-3749765,3749948-3750010,3750101-3750243,
3750358-3750495,3750570-3750691,3750798-3750963,
3751058-3751180,3751325-3751396,3751484-3751591,
3752730-3752846,3752953-3753040,3753162-3753253,
3753378-3753490,3753994-3754127,3754209-3754564,
3754649-3754861
Length = 764
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -2
Query: 534 ACRVSTYSFNIENEHKMGSLRVYFCDICILMLVGINYFLLAEVV 403
+C V T F++ E + +Y D+C+ VGIN ++ E+V
Sbjct: 47 SCIVRTNCFSVHLE-SLDDQTIYEYDVCVTPEVGINRAVIRELV 89
>04_03_0611 -
18011469-18012563,18012756-18012920,18013542-18013639,
18014541-18015498
Length = 771
Score = 27.5 bits (58), Expect = 7.4
Identities = 20/79 (25%), Positives = 34/79 (43%)
Frame = -2
Query: 486 MGSLRVYFCDICILMLVGINYFLLAEVVPVSIAPFEDRKGNCSCGGFPTVTPDPGSLPLL 307
+ S+ F D L+++ ++ L AE + + A + CGG V P S
Sbjct: 9 VASICAAFYDSIWLLVLLLSTALAAETLDGAQAASSQCQNATKCGGVDIVYPFGLSSSGC 68
Query: 306 SQTPSLVVKCDQEGDNTCK 250
+ +PS V C+ G+ K
Sbjct: 69 AMSPSFEVDCNNTGNGVQK 87
>04_04_0671 -
27157692-27158620,27158711-27158828,27158967-27159156,
27159281-27159415,27159537-27159634,27160034-27160206,
27160299-27160772,27161464-27161518
Length = 723
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -2
Query: 498 NEHKMGSLRVYFCDICILMLVGINYFLLAEVVPVSIAPFEDR 373
+E M L Y ICI +LVG ++ +V+ V++ +R
Sbjct: 364 SESSMSGLFGYKSFICIALLVGDGFYNFVKVIVVTLKSVRER 405
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,856,544
Number of Sequences: 37544
Number of extensions: 299412
Number of successful extensions: 777
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -