Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13f10
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.2  
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz...    28   1.6  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    28   1.6  
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    28   1.6  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    28   1.6  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    27   2.9  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    27   3.8  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   5.0  
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar...    26   6.6  
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        26   6.6  
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   6.6  
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    25   8.8  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    25   8.8  
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       25   8.8  
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    25   8.8  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   8.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   8.8  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +1

Query: 586 SPFTSTTQRNRAQHVGNSTFSSSMYSWHSSAFSGIFGFRHPTAAMKYFPSLISH 747
           S F+STT  +++    +ST SSS  +  S+  S       P ++  +  SL SH
Sbjct: 353 SSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSH 406


>SPCC1259.09c |||pyruvate dehydrogenase protein x
           component|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 456

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
 Frame = +3

Query: 303 SVKQRV-HCGALSSGAVLHLRRGVVDKPTAANIAAIRCSSAVKYSRRRLTLGLATDRCLL 479
           SVKQR  HC AL+  A +     +       NI          +    + L + TD+  +
Sbjct: 20  SVKQRYFHCSALNGVASMFRMPALSPTMEEGNITKWHFKEGDSFKSGDILLEVETDKATM 79

Query: 480 DAAHSDNSRIWLVLL 524
           D    DN  +  VL+
Sbjct: 80  DVEVQDNGILAKVLI 94


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 5/110 (4%)
 Frame = +3

Query: 210 LYVIGKIRSVLFGGVSV----YFDGVTLIVVFPIRSVKQRV-HCGALSSGAVLHLRRGVV 374
           +Y +  + S  F   S+    YF      +  P       + + GA  S     L    +
Sbjct: 282 IYSVQFLNSTFFSNYSIITDAYFQTRETYIYLPAELAYSVMDNAGAYLSEGYFALNCDEI 341

Query: 375 DKPTAANIAAIRCSSAVKYSRRRLTLGLATDRCLLDAAHSDNSRIWLVLL 524
           D   AA I    C+S +K     L +G  ++ CLL    S +S I L LL
Sbjct: 342 DLE-AALIFQFGCNSTIKVPISLLVIGQVSNICLLGIRPSTDSEIVLGLL 390


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 298 FVLSNSGYTVERFRRGLSCI 357
           FV++N GYT+ER   GL  +
Sbjct: 474 FVINNKGYTIERLIHGLHAV 493


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 20/82 (24%), Positives = 35/82 (42%)
 Frame = -1

Query: 479 QQTPVGGEPQGQASPGIFNSRGAADGSDISSRRFIDYPAPQMQDSPRRKRSTVYPLFDRT 300
           ++ PVG     +A+   + S G  D +D  SR+         Q   + + + +Y   D  
Sbjct: 8   RRRPVGIADFDEANDEAYESVGFHDYADYFSRK---------QRKLQNQNAALYKSIDED 58

Query: 299 NREHNYQSHPVKINGYTPEKYT 234
           ++   +    + INGYT   YT
Sbjct: 59  SKSDLFHGLAIAINGYTKPSYT 80


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
 Frame = -1

Query: 596 VNGERIVQTRGQPGEL--FPDKPWKGQQNEPNPAVVGMSGIQQTPVGGEPQGQASPGIFN 423
           VNG  +    G  G +  +P  P +     P P   GM+     P  G P     PG   
Sbjct: 495 VNGRGMPMVPGHNGPMPMYPGMPTQFPAGGPAPGYPGMNARGPVPAQGRP--MMMPGSVP 552

Query: 422 SRGAADGSDI 393
           S G A+   +
Sbjct: 553 SAGPAEAEAV 562


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 298 FVLSNSGYTVERFRRGL 348
           F+++N GYT+ER   GL
Sbjct: 473 FIINNDGYTIERLIHGL 489


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 541 SGNSSPGCPLVCTILSPFTSTTQRNRAQHVGNSTFSSSMYSWHSSAFS 684
           S +SSP      T  SP +S++  + +    +S+ SSS  S  SS+ S
Sbjct: 139 SSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 186


>SPAC977.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 17/72 (23%), Positives = 27/72 (37%)
 Frame = +2

Query: 410 LLLCC*IFQETPDPGARHRPVSAGCRSFRQQQDLARFVGPSMVYRGTVRQAALWFALFSL 589
           LL C  I+ E P   ++ R  + GC      +   RF+    +             LFS+
Sbjct: 52  LLYCWYIYSEVPSASSKFRSFTFGCVVVYHNKFFPRFIRTHSINSIRTFSKFQVIILFSI 111

Query: 590 HLLRRRNAIAHS 625
             + R  +  HS
Sbjct: 112 EKVTRSESKNHS 123


>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 17/72 (23%), Positives = 27/72 (37%)
 Frame = +2

Query: 410 LLLCC*IFQETPDPGARHRPVSAGCRSFRQQQDLARFVGPSMVYRGTVRQAALWFALFSL 589
           LL C  I+ E P   ++ R  + GC      +   RF+    +             LFS+
Sbjct: 52  LLYCWYIYSEVPSASSKFRSFTFGCVVVYHNKFFPRFIRTHSINSIRTFSKFQVIILFSI 111

Query: 590 HLLRRRNAIAHS 625
             + R  +  HS
Sbjct: 112 EKVTRSESKNHS 123


>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 17/72 (23%), Positives = 27/72 (37%)
 Frame = +2

Query: 410 LLLCC*IFQETPDPGARHRPVSAGCRSFRQQQDLARFVGPSMVYRGTVRQAALWFALFSL 589
           LL C  I+ E P   ++ R  + GC      +   RF+    +             LFS+
Sbjct: 52  LLYCWYIYSEVPSASSKFRSFTFGCVVVYHNKFFPRFIRTHSINSIRTFSKFQVIILFSI 111

Query: 590 HLLRRRNAIAHS 625
             + R  +  HS
Sbjct: 112 EKVTRSESKNHS 123


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/39 (23%), Positives = 21/39 (53%)
 Frame = +3

Query: 621 TARGEFDILIFDVFVAFQCVFRYFWFSTSDSSYEVFPVS 737
           T +GE      D+ +  + V++ +W  +  ++  +FPV+
Sbjct: 229 TEQGELSFKKGDIILVLESVYKDWWKGSCKNAVGIFPVN 267


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 84  QMETYTIFKIQIISLTVDIVPFALRLQLRQIER*SGIEIRQILYVIG 224
           ++ T  +  I +  L   + PF   LQ ++ +R  GIE   IL  +G
Sbjct: 850 KLPTSPLKPIVMAGLGTGLAPFRAFLQFKEWQRMQGIESGDILLYLG 896


>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 17/72 (23%), Positives = 27/72 (37%)
 Frame = +2

Query: 410 LLLCC*IFQETPDPGARHRPVSAGCRSFRQQQDLARFVGPSMVYRGTVRQAALWFALFSL 589
           LL C  I+ E P   ++ R  + GC      +   RF+    +             LFS+
Sbjct: 52  LLYCWYIYSEVPSVSSKFRSFTFGCVVVYHNKFFPRFIRTHSINSIRTFSKFQVIILFSI 111

Query: 590 HLLRRRNAIAHS 625
             + R  +  HS
Sbjct: 112 EKVTRSESKNHS 123


>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +3

Query: 309 KQRVHCGALSSGAVLHLRRGVVDKPTAANIAAIRCSSAVKYSRRRLTLGLATDRCLLDAA 488
           ++ + C A++S     L  G+       NI+  +    +KYS   L++GL+ D C L   
Sbjct: 250 QKSITCLAMNSENTRLLSGGLDGHVKIYNISDWKVVHGMKYSGPILSMGLSPDSCNLVVG 309

Query: 489 HSDNS 503
            S+ +
Sbjct: 310 MSNGT 314


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 707  GCRKPKIPENALECHEYIEDEN 642
            G  K  IP+N  EC E + DE+
Sbjct: 1567 GRSKVTIPQNMFECKELVADEH 1588


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 18/72 (25%), Positives = 25/72 (34%)
 Frame = -1

Query: 461  GEPQGQASPGIFNSRGAADGSDISSRRFIDYPAPQMQDSPRRKRSTVYPLFDRTNREHNY 282
            G P     P  FNS             +++ PAP+ Q S   +      +   T     +
Sbjct: 836  GHPLPSPPPADFNSLNV---DFYEPHSYLESPAPEPQPSYEEESFNATVIHAPTPSTATF 892

Query: 281  QSHPVKINGYTP 246
            Q HP   N  TP
Sbjct: 893  QGHPTISNVATP 904


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,208,988
Number of Sequences: 5004
Number of extensions: 69980
Number of successful extensions: 223
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)