Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13f10
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0414 + 9972157-9972257,9972925-9973003,9973657-9973755,997... 33 0.32
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 31 1.3
03_02_0054 + 5292167-5292336,5292434-5292526,5292828-5293003,529... 30 1.7
04_03_0918 - 20806627-20806724,20807674-20807962 29 3.0
12_01_1041 - 10711362-10711428,10711571-10712262,10712622-107127... 29 4.0
10_08_0814 - 20779400-20779487,20779780-20780030,20780528-207808... 29 4.0
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 29 4.0
01_06_1504 + 37821676-37821778,37821855-37822072,37822713-378232... 28 6.9
09_04_0260 - 16197522-16197669,16198027-16198130,16198508-161987... 28 9.2
07_03_0419 - 17993478-17993777,17994045-17994195,17994799-179950... 28 9.2
04_04_1529 + 34176547-34177215,34177280-34177320,34178777-34179053 28 9.2
04_03_0306 + 14136338-14136686,14137408-14137442,14137701-141377... 28 9.2
04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600 28 9.2
>02_02_0414 +
9972157-9972257,9972925-9973003,9973657-9973755,
9973848-9973913,9974225-9974376,9974503-9974584,
9974696-9974781,9974919-9975098,9975320-9975717,
9976192-9976790,9977141-9977239
Length = 646
Score = 32.7 bits (71), Expect = 0.32
Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 8/101 (7%)
Frame = -1
Query: 545 PDKPWKGQQ---NEPNPAVVGMSGIQQ-TPVGGEPQ----GQASPGIFNSRGAADGSDIS 390
P PW+ QQ N P P +G +Q PVG PQ GQ G F S +
Sbjct: 422 PPPPWEIQQSMDNPPQPTQLGQMPLQPGQPVGMHPQSPHSGQFGQGSFMSPQQMANGQLG 481
Query: 389 SRRFIDYPAPQMQDSPRRKRSTVYPLFDRTNREHNYQSHPV 267
+ P PQ + + +YP + N+ S P+
Sbjct: 482 GTQPRQSPQPQSAPNLQYGGMMMYPNSMQVNQGAGMYSQPM 522
>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Frame = -1
Query: 560 PGELFPDKPWKGQQNEPNPAVVGMSGIQQTPVGGEP-QGQASPGIFNSRGAADGSDISSR 384
P ++ P ++ PNP G QQ P P Q AS N AA+G + S
Sbjct: 1938 PSQMADASPSPAREPSPNPVQAGAPPEQQNPTPPNPVQAGASSEQQNPATAAEGVETRST 1997
Query: 383 RFIDYPAPQMQDSPRR 336
R I+ Q+ R
Sbjct: 1998 RTINLTERARQNRQAR 2013
>03_02_0054 +
5292167-5292336,5292434-5292526,5292828-5293003,
5293076-5293122,5293732-5293801,5293960-5294186,
5294274-5294327,5294470-5294545,5294679-5294884
Length = 372
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 294 PIRSVKQRVHCGALSSGAVLHLRRGVVDKPTAANIAA 404
P +V + CG L++GA+LHL V A A
Sbjct: 20 PALAVASNIQCGPLAAGAMLHLAAAVASNAAAGKAQA 56
>04_03_0918 - 20806627-20806724,20807674-20807962
Length = 128
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = -3
Query: 591 WRENSAN-QRAAWRTVPR*TMEG--PTKRAKSCCCRNERHPADTGRWRAPGSGVSWN 430
WR A +R W MEG P + A E++P+ G WR GSG W+
Sbjct: 33 WRRMGAEPERRRWMAAAA-AMEGAEPERPAADVSDGWEQNPSGGGGWRHRGSGWGWS 88
>12_01_1041 -
10711362-10711428,10711571-10712262,10712622-10712777,
10712885-10713957,10714422-10714524,10714694-10714876,
10715007-10715099,10715379-10715564,10716530-10716793
Length = 938
Score = 29.1 bits (62), Expect = 4.0
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Frame = -1
Query: 587 ERIVQTRGQ-PGELFPDKPWK------GQQNEPNPAVVGMSGIQQTPVGGEPQGQASPGI 429
ERI+ +G+ E PD+PWK G ++ VG SG + + Q +
Sbjct: 693 ERILSEKGRRERERLPDRPWKIKTNPTGYLHQHTSPEVGCSGASTGGITID-QNSSQQDY 751
Query: 428 FNSRGAADGSDISSRRFIDYPAPQMQDS 345
S A+G R I++ + Q+Q S
Sbjct: 752 SRSSVPAEGGVFQKRALINHVSEQIQTS 779
>10_08_0814 -
20779400-20779487,20779780-20780030,20780528-20780812,
20781563-20782008,20782095-20782485
Length = 486
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 511 GSFCWPFHGLSGNSSPGCPLVCTIL 585
GSF WPF G +S GC ++C +L
Sbjct: 435 GSFFWPF---VGGTSSGCFMICIVL 456
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -1
Query: 584 RIVQTRGQPGELFPDKPWK--GQQNEPNPAVVGMSGIQQTPVGGEPQGQASPG 432
R++ T G+ + P+KPW + +P+P G G+ + P G +P G ++ G
Sbjct: 55 RLLSTSGRDDD--PNKPWAFTPESGDPDPFAAG-EGV-EAPAGEDPLGLSAAG 103
>01_06_1504 +
37821676-37821778,37821855-37822072,37822713-37823242,
37824040-37824483,37824923-37825616
Length = 662
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 519 KRAKSCCCRNERHPADTG-RWRAPGSGVSWNI*QQRSSGWQRY*QPSVYRLPRAADAGQP 343
KR K CC A+ G R G+ V+W Q RS G QR + ++ ++A G P
Sbjct: 340 KRPKRCCLVPGSPLAEHGERPAGGGTEVAWASSQGRSGGMQRAGGRVLQQVRKSAGGGAP 399
>09_04_0260 -
16197522-16197669,16198027-16198130,16198508-16198719,
16198795-16198900,16199006-16199119,16199200-16199417,
16199837-16199900,16199982-16200335,16200609-16200767,
16201486-16202907
Length = 966
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Frame = -3
Query: 525 PTKRAK---SCCCRNERHPADTGRWRAP 451
P+KR K SCC E PA G RAP
Sbjct: 73 PSKRLKPSSSCCSGKENRPAAAGSGRAP 100
>07_03_0419 -
17993478-17993777,17994045-17994195,17994799-17995036,
17995133-17995343,17995440-17995618,17995735-17995833,
17996646-17997531
Length = 687
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 343 PDESAPQCTRCLTERIGNTT 284
PD S C +CL + +GNTT
Sbjct: 218 PDMSGGDCRQCLQDLVGNTT 237
>04_04_1529 + 34176547-34177215,34177280-34177320,34178777-34179053
Length = 328
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -2
Query: 439 LLEYLTAEEQRMAAILAAVGLSTTPRRRCRTA-PDESAPQCTRC 311
L LTAEEQ + A L + G + RRR R A P E C C
Sbjct: 39 LASALTAEEQEVLAYLLSGGGAAGGRRRRRGAHPPEMGCGCFGC 82
>04_03_0306 +
14136338-14136686,14137408-14137442,14137701-14137778,
14138046-14138124,14138731-14138823,14139472-14139556,
14140270-14140345,14140669-14140794,14141039-14141137,
14141238-14141339,14141561-14141671,14141809-14141904,
14142488-14142539,14142624-14142735,14142879-14142943,
14144124-14144521,14145236-14145330,14145989-14146015,
14146081-14146156,14146368-14146421,14146741-14146863,
14146955-14147023
Length = 799
Score = 27.9 bits (59), Expect = 9.2
Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 11/79 (13%)
Frame = -1
Query: 437 PGIFNSRGAADGSDISSRRFIDYPAPQMQDS----PRRK---RSTVY---PLFDRTNREH 288
PG G +D SD S F+ P P S P RK T P RT RE
Sbjct: 585 PGRSIMYGLSDTSDESDSEFVGAPTPTSSRSHILNPHRKSFQNGTALATPPSNGRTERER 644
Query: 287 N-YQSHPVKINGYTPEKYT 234
N S PV++N + YT
Sbjct: 645 NKTASQPVQLNATSNGDYT 663
>04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600
Length = 585
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -1
Query: 485 GIQQTPVGGEPQGQASPGIFNSRGAADGSDISSRRFIDYPAP 360
G+ P GG G P F S DG +S+ +F P P
Sbjct: 80 GLNAGPTGGGFNGVGFPAPFGSVARPDGGGVSAGKFGVAPGP 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,401,833
Number of Sequences: 37544
Number of extensions: 510107
Number of successful extensions: 1614
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1612
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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