Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13f10
         (752 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC117697-1|AAI17698.1| 1690|Homo sapiens COL11A1 protein protein.      34   0.48 
AK091465-1|BAC03668.1|  816|Homo sapiens protein ( Homo sapiens ...    33   1.5  

>BC117697-1|AAI17698.1| 1690|Homo sapiens COL11A1 protein protein.
          Length = 1690

 Score = 34.3 bits (75), Expect = 0.48
 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
 Frame = -1

Query: 662 EYIEDENV-EFPTCCARLRCVVEVNGERIVQTRGQPGELFPDKPWKGQQNEPNPA----V 498
           EY E E+V E PT         E+NG      +GQ GE    +P    +  P PA    +
Sbjct: 277 EYKEAESVTEGPTVTEETIAQTEINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGI 336

Query: 497 VGMSGIQ-QTPVGGEPQGQASPG 432
           +G  G+Q  T   G+P  +  PG
Sbjct: 337 MGPPGLQGPTGPPGDPGDRGPPG 359


>AK091465-1|BAC03668.1|  816|Homo sapiens protein ( Homo sapiens
           cDNA FLJ34146 fis, clone FCBBF3011889, weakly similar to
           Drosophila melanogaster La related protein (larp) mRNA.
           ).
          Length = 816

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 19/72 (26%), Positives = 31/72 (43%)
 Frame = -1

Query: 569 RGQPGELFPDKPWKGQQNEPNPAVVGMSGIQQTPVGGEPQGQASPGIFNSRGAADGSDIS 390
           R +P    P K   GQQ   +P  + + G +   +    +G   PG     GAA  +   
Sbjct: 55  RPRPPCAKPHKEGTGQQERESPRPLQLPGAEGPAISDGEEGGGEPGA--GGGAAGAAGAG 112

Query: 389 SRRFIDYPAPQM 354
            R F++ P P++
Sbjct: 113 RRDFVEAPPPKV 124


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,701,392
Number of Sequences: 237096
Number of extensions: 2891152
Number of successful extensions: 7727
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7705
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9071127468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)