Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13f10
(752 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF043700-2|AAB97570.1| 283|Caenorhabditis elegans Collagen prot... 31 0.88
Z82262-2|CAB05152.1| 248|Caenorhabditis elegans Hypothetical pr... 30 1.5
U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protei... 30 1.5
Z81105-5|CAB03218.2| 331|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z81567-3|CAB04587.1| 301|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 29 4.7
U80450-11|AAM15595.1| 664|Caenorhabditis elegans Temporarily as... 29 4.7
U80450-9|AAK77615.1| 1112|Caenorhabditis elegans Temporarily ass... 29 4.7
U80450-8|AAK77616.1| 949|Caenorhabditis elegans Temporarily ass... 29 4.7
U61954-5|AAK29812.1| 575|Caenorhabditis elegans Hypothetical pr... 29 4.7
AF099923-4|AAC68808.2| 303|Caenorhabditis elegans Hypothetical ... 28 6.2
AC024791-36|AAF60654.3| 481|Caenorhabditis elegans Innexin prot... 28 6.2
Z99281-19|CAD56260.1| 317|Caenorhabditis elegans Hypothetical p... 28 8.2
Z67734-3|CAA91529.2| 1050|Caenorhabditis elegans Hypothetical pr... 28 8.2
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 28 8.2
U53149-5|AAA96121.2| 427|Caenorhabditis elegans Hypothetical pr... 28 8.2
AL033514-4|CAA22094.2| 827|Caenorhabditis elegans Hypothetical ... 28 8.2
AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical ... 28 8.2
AF040657-2|AAB95050.2| 312|Caenorhabditis elegans Hypothetical ... 28 8.2
>AF043700-2|AAB97570.1| 283|Caenorhabditis elegans Collagen protein
49 protein.
Length = 283
Score = 31.1 bits (67), Expect = 0.88
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = -1
Query: 569 RGQPGELFPDKPWKGQQNEPNP-AVVGMSGIQQTPVG--GEPQGQASPGIFNSRGA 411
+G PG P +GQ +P A+VG++G + P G GEP Q PG+ GA
Sbjct: 185 QGPPGSAGRAGP-RGQAGQPGTIAIVGLAG-RPGPQGPLGEPGAQGEPGVDGKDGA 238
>Z82262-2|CAB05152.1| 248|Caenorhabditis elegans Hypothetical
protein C43F9.5 protein.
Length = 248
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 284 SCVPDSFCQTAGTLWSAFVGGCPASAARGSR*TDGC*YRCHPLLLCC 424
+C+ C T G ++ GG PA +A G+ T G +RC CC
Sbjct: 141 TCMNGICCTTTGNEYTGSCGGLPAISACGTGQTCGS-FRCTSSNYCC 186
>U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protein
114 protein.
Length = 321
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/57 (35%), Positives = 23/57 (40%)
Frame = -1
Query: 566 GQPGELFPDKPWKGQQNEPNPAVVGMSGIQQTPVGGEPQGQASPGIFNSRGAADGSD 396
G PGE D P +G +P G SGI P P G A P G A G +
Sbjct: 220 GMPGEPGKDAPQEGSPVPGDPGPPGDSGIPGPP---GPPGMAGPDGIPGMGGAKGQN 273
>Z81105-5|CAB03218.2| 331|Caenorhabditis elegans Hypothetical
protein R05D7.5 protein.
Length = 331
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 425 NSRGAADGSDISSRRFIDYPAPQMQDSPRR 336
N+ G DGS I RR + +P MQ++P R
Sbjct: 200 NAMGKLDGSFIKDRRIYNLSSPDMQNTPVR 229
>Z81567-3|CAB04587.1| 301|Caenorhabditis elegans Hypothetical
protein K08C9.4 protein.
Length = 301
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Frame = -1
Query: 566 GQPGELFPDKPWKGQQNEPNPAVVGMSGIQQTPVGGEPQGQA-SPGIFNSRGAADGSDIS 390
G PG PD + P G +GI P PQG A + G GA + +
Sbjct: 140 GAPGPAGPDGEAGAPGPDGQPGQDGPAGIDGAPGEAGPQGDAGAAGQDGEAGAPGPAGKN 199
Query: 389 SRRFIDYPAPQMQDSP 342
+R P PQ + P
Sbjct: 200 GQRGQGAPGPQGPEGP 215
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/76 (27%), Positives = 35/76 (46%)
Frame = +1
Query: 457 SPPTGVCWMPLIPTTAGFGSFCWPFHGLSGNSSPGCPLVCTILSPFTSTTQRNRAQHVGN 636
SP T + +++ + P S ++SP + + +P TSTT + + +
Sbjct: 452 SPSTSPVTSTVTSSSSSSTTVTTPTSTESTSTSPSSTVTTSTTAPSTSTTGPSSSSSTPS 511
Query: 637 STFSSSMYSWHSSAFS 684
ST SSS+ S SS S
Sbjct: 512 STASSSVSSTASSTQS 527
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/76 (27%), Positives = 35/76 (46%)
Frame = +1
Query: 457 SPPTGVCWMPLIPTTAGFGSFCWPFHGLSGNSSPGCPLVCTILSPFTSTTQRNRAQHVGN 636
SP T + +++ + P S ++SP + + +P TSTT + + +
Sbjct: 452 SPSTSPVTSTVTSSSSSSTTVTTPTSTESTSTSPSSTVTTSTTAPSTSTTGPSSSSSTPS 511
Query: 637 STFSSSMYSWHSSAFS 684
ST SSS+ S SS S
Sbjct: 512 STASSSVSSTASSTQS 527
>U80450-11|AAM15595.1| 664|Caenorhabditis elegans Temporarily
assigned gene nameprotein 163, isoform d protein.
Length = 664
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 458 EPQGQASPGIFNSRGAADGSDISSRRFIDYPAPQMQDSPRRKRSTVY 318
E +G+A+P I D D +SR F PA MQ++ R R T +
Sbjct: 56 ELEGRATPSIEPDLVGRDRYDKASRCFSYVPAKSMQEAFERPRRTSF 102
>U80450-9|AAK77615.1| 1112|Caenorhabditis elegans Temporarily
assigned gene nameprotein 163, isoform a protein.
Length = 1112
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 458 EPQGQASPGIFNSRGAADGSDISSRRFIDYPAPQMQDSPRRKRSTVY 318
E +G+A+P I D D +SR F PA MQ++ R R T +
Sbjct: 56 ELEGRATPSIEPDLVGRDRYDKASRCFSYVPAKSMQEAFERPRRTSF 102
>U80450-8|AAK77616.1| 949|Caenorhabditis elegans Temporarily
assigned gene nameprotein 163, isoform c protein.
Length = 949
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 458 EPQGQASPGIFNSRGAADGSDISSRRFIDYPAPQMQDSPRRKRSTVY 318
E +G+A+P I D D +SR F PA MQ++ R R T +
Sbjct: 56 ELEGRATPSIEPDLVGRDRYDKASRCFSYVPAKSMQEAFERPRRTSF 102
>U61954-5|AAK29812.1| 575|Caenorhabditis elegans Hypothetical
protein F41H10.4 protein.
Length = 575
Score = 28.7 bits (61), Expect = 4.7
Identities = 28/108 (25%), Positives = 47/108 (43%)
Frame = -1
Query: 656 IEDENVEFPTCCARLRCVVEVNGERIVQTRGQPGELFPDKPWKGQQNEPNPAVVGMSGIQ 477
IE ENVE T A L+ + N + I+Q + L + KG+ E + I+
Sbjct: 444 IESENVELITRLATLQKIHSENADSILQLESENSRLRREVTEKGELIE--------NLIR 495
Query: 476 QTPVGGEPQGQASPGIFNSRGAADGSDISSRRFIDYPAPQMQDSPRRK 333
+ P+G Q Q + G +S + S R+ ++ +DS R+
Sbjct: 496 EKPLGTGFQQQNNLGSSSSSSVQPKLEASFRKLLNTLGQDSRDSDVRE 543
>AF099923-4|AAC68808.2| 303|Caenorhabditis elegans Hypothetical
protein H09G03.1 protein.
Length = 303
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = -3
Query: 285 LSKSPRQNKRIHPRKVHFVFFQ*RKEFV*F--QSQTIAQSVLIEVVTQTVLYLPLMILF 115
+SK Q+ + HP + VF++ + + + + +T+ Q L V QT+L LPL +F
Sbjct: 188 VSKKSYQSDKGHPLIIETVFYRMKSKLLLLLKEYRTLFQYSLPHVSYQTILILPLSHVF 246
>AC024791-36|AAF60654.3| 481|Caenorhabditis elegans Innexin protein
21 protein.
Length = 481
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +3
Query: 408 RCSSAVKYSRRRLTLGLATDRCLLDAAHSDNSRIWLVLLALPWFIGEQFARLPSGLHYSL 587
R + ++ + R A RC+L +A+ N++ +LVL WF+ F L S +HY++
Sbjct: 254 RLAMSIGFYRSYTNAHSAVARCML-SANFLNAKAFLVLYW--WFLLVSFISLCSAIHYTI 310
>Z99281-19|CAD56260.1| 317|Caenorhabditis elegans Hypothetical
protein Y57G11C.38 protein.
Length = 317
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 349 TAPDESAPQCTRCLTERIGNTTIKV 275
T PD + C C + +GNTTI++
Sbjct: 126 TLPDRNLVHCEECGSVTVGNTTIQI 150
>Z67734-3|CAA91529.2| 1050|Caenorhabditis elegans Hypothetical
protein B0198.3 protein.
Length = 1050
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -1
Query: 338 RKRSTVYPLFDRTNREHNYQSHPVKINGYTPEKYTSYFSNNVK 210
R++ V P+ + R+ + HP++IN +P + Y S + K
Sbjct: 811 RRQVMVTPVTADSGRQSQHDDHPLRINNASPNPSSGYDSFSSK 853
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 27.9 bits (59), Expect = 8.2
Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 8/119 (6%)
Frame = -1
Query: 560 PGELFPDKPWKGQQNEPNPAVVGMSGIQQTPVGGEPQGQASPGIFNS------RGAADGS 399
P E P P QQ P + +QQ GQ +FNS G DG
Sbjct: 1502 PEETTPIIPQHAQQFSAAPTMSAQGSLQQMQGTSSGGGQRPYSLFNSFVDTIKSGKQDG- 1560
Query: 398 DISSRRF--IDYPAPQMQDSPRRKRSTVYPLFDRTNREHNYQSHPVKINGYTPEKYTSY 228
D++ ++ +D +M + RR + T+ +HN + GY+ + + Y
Sbjct: 1561 DVTDVQYQSVDQQHEKMNSTGRRLSDMFSKIRRGTSADHNPHQNYSHRFGYSRNRGSRY 1619
>U53149-5|AAA96121.2| 427|Caenorhabditis elegans Hypothetical
protein C24B5.1 protein.
Length = 427
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 591 IYFDDATQSRTARGEFDILIFDVFVAFQCVFRYFW 695
IYF D Q R + IF+ F+A C F W
Sbjct: 140 IYFYDIFQDSLLRNSYYSCIFNTFLAHVCDFASVW 174
>AL033514-4|CAA22094.2| 827|Caenorhabditis elegans Hypothetical
protein Y75B8A.3 protein.
Length = 827
Score = 27.9 bits (59), Expect = 8.2
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = -1
Query: 440 SPGIFNSRGAADGSDISSRRFIDYPAPQMQDSPRRKRSTVYPLFDRTNREHNYQSHPVKI 261
S +FN GS S P P + +P+ + +T P++D++N + +
Sbjct: 241 SQNLFNQAIVQSGSVYSCYN----PTPAVPTNPQVQVTTPRPMYDQSNTGYGNAGYQNNY 296
Query: 260 NGYTPEKYTSYFSNN 216
GY P+ TS S N
Sbjct: 297 -GYQPQPITSTSSYN 310
>AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical
protein Y39G8C.1 protein.
Length = 1195
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/59 (27%), Positives = 23/59 (38%)
Frame = +3
Query: 405 IRCSSAVKYSRRRLTLGLATDRCLLDAAHSDNSRIWLVLLALPWFIGEQFARLPSGLHY 581
I C A+KYSRR L + TDR +++W + E + P Y
Sbjct: 1019 INCGLALKYSRRDLCVADYTDRTEHTNQRGVTNKVWFYTNLATRLVSEYRRKFPDVWKY 1077
>AF040657-2|AAB95050.2| 312|Caenorhabditis elegans Hypothetical
protein T20H9.1 protein.
Length = 312
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 582 SLSIYFDDATQSRTARGEFDILIFDVFVAFQCVFRYFWFSTSDS 713
SLS+ FD T+ + D++ D F + F WFST+ +
Sbjct: 219 SLSVEFDFFTEENAIKIRDDLMKRDTFRRCEVWFNSSWFSTAQT 262
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,071,232
Number of Sequences: 27780
Number of extensions: 426296
Number of successful extensions: 1349
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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